Gene detail

Detailed information of gfas1.m1.15092.m1 in Galaxea fascicularis

Genomic Location: xfSc0000119:56190...66848
NR annotation: CAH3146404.1, unnamed protein product [Pocillopora meandrina]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gfas1.m1.15092.m1

ATGGCGGGCATTTCGAGTGGACAGATTCTTCGCTTGAAGGAAGTTGTTCAGCTTGGCAGATGTTTGGATAATAAGTCTGTCAGAACATGGGGAAGGGCAATTGCTCATGACATTACAAAAAGTGAACTTAAAATTTGTGCAGATGGACTTGAAATGTTGATAGACACTTCACTAGTGGAACCAATGGCATTCAACAGAGGCTCCATGTATCATTTTATTGGAGAAATTCATATTCAGGACAGACTAACGTTACGGGCAAGAATAGCTGGCTGTATTGATGGAATGGATATGGAACTCTTCAACCAGGCATTAGACATGAGGAGAAAATATCTACAGGAAGAGATATTTCCTCAATCTATTTGGTACCGACGCCGGAATATGGCGCGCTTCGGAATTGTAAACAAGAAACACGCCCGAATATCTCAAGATCCCGGCAAATTTAAACCCTACCTACTCGTGGGTATCACTTCTATCTGCTGTTATTTAAATTCTATATTCGGGGAGTTTGTTTACGATGATTTTGAAGTTATCGAGACAAACGCGGACGTAAGACCTTCATCTCCCCTTTCCAGCTTGTTCAGGAACGATTTCTGGGGCATTCCTTTACAAAGCAACGAGTCTCACAAATCATACCGCCCTATCACGGTACTCACGTTTCGCTGGAACTATTTCATTGGAGGTTTGAATCCGATTGGCTACCATTTAGTCAATGTACTCCTTCACTCTGTGGTCTCAGTATTATTCCTTAATTTTTGTACAAGAATATTCCATGGATACCTTACTCTACAAACCAGTTCATTGTCTCTCCTCTGTGGATTGTTTTTTGCCGTGCATCCAATTCACACTGAAGCTGTAGCCAATGTTGTTGGCCGAGCCGACGTTCTCTGCGGTTTGTTTTATCTTTTGGCTTTGCTGTCTTTTATAAACTGTTTTCCAGATGGAAATACATTTGACGGAAATAAAAAATCACCAAAGTATTCAAGGCTTTGGCTTGCTTCATGTATCTTTTGCAGCATTTTGTCGCTGTTTAGTAAGGAGCAGGGTATCACTGTATTCGGAGTTTGTGTGGTGTTTGATATGGTATTTGTCTGCAAGTATACTGGAGAACATTTGCTCAAATCGCCAGCAGTGTTTTTGAGATTATGTCCCAAGTGGTTTGTTCGTTTGATCGAAAGACTTTCAATCGTCGCCTTAGCAACAGTAGCTCTACTTTACTTCAGACTAATCATCATTTCTCGTGGTTTGCCATTGTCTTTTACTGAGTCCGACAATCCAACATTATTTCATCCTGATCTTTGGACTCGATTTAGAACCTATTGTTACTTATGCGCATTGAATGTGCGTCTTCTTCTGTGTCCGAACATTCTCTGTTATGAATGGTCCATGGACAGCATATCCCGGATTGAGTCCTGGTGGGACATGCGCAATTTGGAGACCTTAGTCGTCGCTTTGGTCAGTTCTTGCTTGTGTGTTTATGGTTTAAAGCCTTCAAACACATGCGTTTTAGCACCACTGGAGCCAAATCAGAGCGTTTTCAAACCTACGGCGTTAGATTCCAACCGAAATAATCTTGACCGCAGTAACAAAAATTGCCAAATGGGAGAGCCATACGTTGCAGGAGAAAAAAGGGATGACATAAGTACAGTTCAAAGAAAGCGGGTCGTGTTATTGGCGCTAAGTATGATGGTTATACCATTTCTACCCGCCTCTAACCTCCTGTTTCCCGTTGGATTTGTCGTTGCTGAGCGTCTTCTCTACATTCCAAGCATGGGTTTCTGTATTCTCGTTCCTTTTGGAATTTCAGTCTTGTTTCGGCAGACGACGGAGAGAAATAAGGACGAATCCTCGACTCATGAGGAGAACAAAGATAACGACCAAAAAGAAAGTTCAGTTTCGTCAGTATGTTGGTCTTTTGGTGTGAACACAGTAGGCAGGCTCATTATTTACTCTCTGTTATTGGTGTATTTCGTCAAAACTCTTCACCGCAATTCCGAGTGGTTGTACAAGGAAAGGTTGGCGAGATCAGGACTTAAAGTGAACCCAACAAATGCAAAGATTCATGTCACTTTAGGGAATGTTCTGGCCAATAGGGGCCTCTTGTCATGTGAATATCACTACCGTGAAGCATTGCGACTGAGGCCGCATTACGTTGCAGCCTGGGAAAACCTCGGTCTGGTTCTACTTAACACAGGCCGTATCAAGGAAGCGGAGCAGTGCTACTTGAACGCGCTATCGATCAAACCTAACAGCGCAGATGGTCATATCAATCTCGCGCACTTGTTAAGAGTAACTGGGAGGCTACAGGAAGCCAACAAACAGTATGAGAAGGCCTTATCCTTCAGACCTCACAATCCACAGCTTAATTACTTCCATGGTGTTGTATTGGAAAAACTCGGAAAAATCAAGAAAGCCGAGGAGAAATACCTGAAGACAGCCAAATTAACGCCATCAGATGGTATTCCGTTTTTGTCAATTGGGAAAATGTTTGCTATTCCTGTTCTCATCAAAAAAGCAAAAAATGGGAGCGAAAAATTGATCAAGAAGGCTGAAGAATTCTTACGGAAAGGATTGATGTTGAAACCCTCGGACACAGACAGCCGCTTGCTGCTGGTTCGACTTTATCTCCTTCAGGGCAACTTTGACATGGCGGAATTAGAGGTCCGCGCACTGCTCAAATATGATCCTGGGAGCAAAGAAGCAGAATTCGTCTTGGGCAGAATCCTTGAGGTCAAAGGTTTTCTGAAAGAGGCCAGGCAACGTTTTCAACAAGTGCTGAGAAAAGATAACACACACAGTGGTGCCATTGCTGGGCTTCAAAGATTAAGTACAAAGGTTTGA

Transcript

gfas1.m1.15092.m1

CAAAAATAAAATGGCGGGCATTTCGAGTGGACAGATTCTTCGCTTGAAGGAAGTTGTTCAGCTTGGCAGATGTTTGGATAATAAGTCTGTCAGAACATGGGGAAGGGCAATTGCTCATGACATTACAAAAAGTGAACTTAAAATTTGTGCAGATGGACTTGAAATGTTGATAGACACTTCACTAGTGGAACCAATGGCATTCAACAGAGGCTCCATGTATCATTTTATTGGAGAAATTCATATTCAGGACAGACTAACGTTACGGGCAAGAATAGCTGGCTGTATTGATGGAATGGATATGGAACTCTTCAACCAGGCATTAGACATGAGGAGAAAATATCTACAGGAAGAGATATTTCCTCAATCTATTTGGTACCGACGCCGGAATATGGCGCGCTTCGGAATTGTAAACAAGAAACACGCCCGAATATCTCAAGATCCCGGCAAATTTAAACCCTACCTACTCGTGGGTATCACTTCTATCTGCTGTTATTTAAATTCTATATTCGGGGAGTTTGTTTACGATGATTTTGAAGTTATCGAGACAAACGCGGACGTAAGACCTTCATCTCCCCTTTCCAGCTTGTTCAGGAACGATTTCTGGGGCATTCCTTTACAAAGCAACGAGTCTCACAAATCATACCGCCCTATCACGGTACTCACGTTTCGCTGGAACTATTTCATTGGAGGTTTGAATCCGATTGGCTACCATTTAGTCAATGTACTCCTTCACTCTGTGGTCTCAGTATTATTCCTTAATTTTTGTACAAGAATATTCCATGGATACCTTACTCTACAAACCAGTTCATTGTCTCTCCTCTGTGGATTGTTTTTTGCCGTGCATCCAATTCACACTGAAGCTGTAGCCAATGTTGTTGGCCGAGCCGACGTTCTCTGCGGTTTGTTTTATCTTTTGGCTTTGCTGTCTTTTATAAACTGTTTTCCAGATGGAAATACATTTGACGGAAATAAAAAATCACCAAAGTATTCAAGGCTTTGGCTTGCTTCATGTATCTTTTGCAGCATTTTGTCGCTGTTTAGTAAGGAGCAGGGTATCACTGTATTCGGAGTTTGTGTGGTGTTTGATATGGTATTTGTCTGCAAGTATACTGGAGAACATTTGCTCAAATCGCCAGCAGTGTTTTTGAGATTATGTCCCAAGTGGTTTGTTCGTTTGATCGAAAGACTTTCAATCGTCGCCTTAGCAACAGTAGCTCTACTTTACTTCAGACTAATCATCATTTCTCGTGGTTTGCCATTGTCTTTTACTGAGTCCGACAATCCAACATTATTTCATCCTGATCTTTGGACTCGATTTAGAACCTATTGTTACTTATGCGCATTGAATGTGCGTCTTCTTCTGTGTCCGAACATTCTCTGTTATGAATGGTCCATGGACAGCATATCCCGGATTGAGTCCTGGTGGGACATGCGCAATTTGGAGACCTTAGTCGTCGCTTTGGTCAGTTCTTGCTTGTGTGTTTATGGTTTAAAGCCTTCAAACACATGCGTTTTAGCACCACTGGAGCCAAATCAGAGCGTTTTCAAACCTACGGCGTTAGATTCCAACCGAAATAATCTTGACCGCAGTAACAAAAATTGCCAAATGGGAGAGCCATACGTTGCAGGAGAAAAAAGGGATGACATAAGTACAGTTCAAAGAAAGCGGGTCGTGTTATTGGCGCTAAGTATGATGGTTATACCATTTCTACCCGCCTCTAACCTCCTGTTTCCCGTTGGATTTGTCGTTGCTGAGCGTCTTCTCTACATTCCAAGCATGGGTTTCTGTATTCTCGTTCCTTTTGGAATTTCAGTCTTGTTTCGGCAGACGACGGAGAGAAATAAGGACGAATCCTCGACTCATGAGGAGAACAAAGATAACGACCAAAAAGAAAGTTCAGTTTCGTCAGTATGTTGGTCTTTTGGTGTGAACACAGTAGGCAGGCTCATTATTTACTCTCTGTTATTGGTGTATTTCGTCAAAACTCTTCACCGCAATTCCGAGTGGTTGTACAAGGAAAGGTTGGCGAGATCAGGACTTAAAGTGAACCCAACAAATGCAAAGATTCATGTCACTTTAGGGAATGTTCTGGCCAATAGGGGCCTCTTGTCATGTGAATATCACTACCGTGAAGCATTGCGACTGAGGCCGCATTACGTTGCAGCCTGGGAAAACCTCGGTCTGGTTCTACTTAACACAGGCCGTATCAAGGAAGCGGAGCAGTGCTACTTGAACGCGCTATCGATCAAACCTAACAGCGCAGATGGTCATATCAATCTCGCGCACTTGTTAAGAGTAACTGGGAGGCTACAGGAAGCCAACAAACAGTATGAGAAGGCCTTATCCTTCAGACCTCACAATCCACAGCTTAATTACTTCCATGGTGTTGTATTGGAAAAACTCGGAAAAATCAAGAAAGCCGAGGAGAAATACCTGAAGACAGCCAAATTAACGCCATCAGATGGTATTCCGTTTTTGTCAATTGGGAAAATGTTTGCTATTCCTGTTCTCATCAAAAAAGCAAAAAATGGGAGCGAAAAATTGATCAAGAAGGCTGAAGAATTCTTACGGAAAGGATTGATGTTGAAACCCTCGGACACAGACAGCCGCTTGCTGCTGGTTCGACTTTATCTCCTTCAGGGCAACTTTGACATGGCGGAATTAGAGGTCCGCGCACTGCTCAAATATGATCCTGGGAGCAAAGAAGCAGAATTCGTCTTGGGCAGAATCCTTGAGGTCAAAGGTTTTCTGAAAGAGGCCAGGCAACGTTTTCAACAAGTGCTGAGAAAAGATAACACACACAGTGGTGCCATTGCTGGGCTTCAAAGATTAAGTACAAAGGTTTGACAAAAACCTGTGTAAAATAAAATATCATTGTATAGTGAAGTTAGACTAGACTGTTTCGTTGATGGCTGATTAGGGCGT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BG19	Protein O-mannosyl-transferase TMTC4 OS=Mus musculus OX=10090 GN=Tmtc4 PE=2 SV=1
Q5T4D3	Protein O-mannosyl-transferase TMTC4 OS=Homo sapiens OX=9606 GN=TMTC4 PE=1 SV=2
Q6ZXV5	Protein O-mannosyl-transferase TMTC3 OS=Homo sapiens OX=9606 GN=TMTC3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000850 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14559 all species →	TPR_19	Tetratricopeptide repeat	Repeat	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF08409 all species →	TMTC_DUF1736	Protein O-mannosyl-transferase TMTC, DUF1736	Family	Interproscan
PF15490 all species →	Ten1_2	Telomere-capping, CST complex subunit	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR052384 all species →	Family	O-mannosyl-transferase TMTC	Interproscan
IPR013618 all species →	Domain	Protein O-mannosyl-transferase TMTC, DUF1736	Interproscan
IPR029146 all species →	Family	CST complex subunit Ten1, animal and plant type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44216 all species →	PROTEIN O-MANNOSYL-TRANSFERASE TMTC2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000030 all species →	Molecular Function	mannosyltransferase activity	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0035269 all species →	Biological Process	protein O-linked mannosylation	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:1990879 all species →	Cellular Component	CST complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gfas1.m1.15092.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.