Gene detail

Detailed information of gfas1.m1.15134.m1 in Galaxea fascicularis

Genomic Location: xfSc0000122:27067...28515
NR annotation: XP_029200368.2, tryptophan 2,3-dioxygenase-like [Acropora millepora]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P48775	Tryptophan 2,3-dioxygenase OS=Homo sapiens OX=9606 GN=TDO2 PE=1 SV=1
Q7SY53	Tryptophan 2,3-dioxygenase B OS=Danio rerio OX=7955 GN=tdo2b PE=2 SV=1
B4JKK1	Tryptophan 2,3-dioxygenase OS=Drosophila grimshawi OX=7222 GN=v PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003312 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03301 all species →	Trp_dioxygenase	Tryptophan 2,3-dioxygenase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004981 all species →	Family	Tryptophan 2,3-dioxygenase	Interproscan
IPR037217 all species →	Homologous_superfamily	Tryptophan/Indoleamine 2,3-dioxygenase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10138 all species →	TRYPTOPHAN 2,3-DIOXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004833 all species →	Molecular Function	tryptophan 2,3-dioxygenase activity	Interproscan
GO:0019441 all species →	Biological Process	tryptophan catabolic process to kynurenine	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0019442 all species →	Biological Process	tryptophan catabolic process to acetyl-CoA	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gfas1.m1.15134.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of gfas1.m1.15134.m1 across 22 RNA-seq samples of Galaxea fascicularis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

22Samples

0TPM > 0

4Conditions

0.0Max TPM

0.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM	Mean, relative to max
coral holosome · Control	7	0	0.00	0.00
coral holosome · 30ic treatment	6	0	0.00	0.00
coral holosome · Prometryn (herbicidess) treatment	5	0	0.00	0.00
coral holosome · Prometryn (herbicidess) and 30ic treatment	4	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study
SRR27118480	coral holosome · Control	coral holosome	not recorded	Control	SRP476288
SRR27118485	coral holosome · Control	coral holosome	not recorded	Control	SRP476288
SRR27118486	coral holosome · Control	coral holosome	not recorded	Control	SRP476288
SRR27118487	coral holosome · Control	coral holosome	not recorded	Control	SRP476288
SRR27118488	coral holosome · Control	coral holosome	not recorded	Control	SRP476288
SRR27118491	coral holosome · Control	coral holosome	not recorded	Control	SRP476288
SRR27118492	coral holosome · Control	coral holosome	not recorded	Control	SRP476288
SRR27118466	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288
SRR27118468	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288
SRR27118476	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288
SRR27118477	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288
SRR27118478	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288
SRR27118479	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288
SRR27118469	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288
SRR27118481	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288
SRR27118482	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288
SRR27118483	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288
SRR27118484	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288
SRR27118472	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288
SRR27118475	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288
SRR27118489	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288
SRR27118490	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288

Source: CnidoSite RNA-seq expression matrices (GFASC_TPM, StringTie quantification over 22 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.