Gene detail

Detailed information of gfas1.m1.1529.m1 in Galaxea fascicularis

Genomic Location: Sc0000045:59790...68537
NR annotation: KAJ7370137.1, WD repeat-containing protein 46 [Desmophyllum pertusum]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gfas1.m1.1529.m1

ATGGCGGACACAGCGAAGGAAAAAAAGGTCTTAAAGAAAACAAAAGATGAAGAAACAGTGGACCAAAATATACTACAGAAGTACCATAGAGGGAGACAAAGTAGATTCAAGAATTTAAAAGACAAGAAACTGCGGGGCAAGCTCAAGTCGTATGAATCACAATACCATCAGGCAGCAGTTCGAGCTGCGAAATCTGAATTACTTCTCACAGAGCAACCAGGGTATTTAGAGGCTGAAGGATTAGAAAAAACCTTTAAATTCAAACAAAGGGATATTGCAAGTGTGGTTGACATTGCAAGTGCCACAAAGGTACTAGAATTTTGTTGTATAAAATTTCTTCTCATTGGTGGAAAGAAGGGTCACTTGGCCACAATGGACTGGCAAAACAAGAAACTTGGTTGTGAAGTTCATGTACAGGAAACTGTCAGAGATGTCAGGTGGTTACATATCGAGACCATGTTTGCTGTTGCTCAAAAGAAATGTGTGTACATTTATGATAACACTGGAATAGAACTTCACTGCCTAAAAAACCAACGATAAGTGAATAGATTAGAGTTTTTGCCATACCATTTCCTCCTTGCATCAGTGGTAAGTGACTGGCTTTAGTTTTGTACAAAACAATCCTAAAACTGATTGAGTGATTTTTTTTCAGAAATGGTACATTAAATTTGCATGTTAACACACTTGCAGTCCCACTATCAGCCTGCATTCTATACCAATAATTATTGCACTCAAATAAACCCATAAATTCTGCTAGTTTTGTGGTTGCCATGCCACCTTTGACAGGTGACTACATTAGAGTGACTTTAACCATGCACTGGCAACCTGGCAATTAAGATCCTTGTACCAACACTGGTCCACCACTGCTCCTTAGGGGGGAGCAGGGTTGGCACAGTGTGGAGAGAGCTCACTTTCCACCAATGTGCCCCAGGTTCAATTCCCAGACTTGGAGTCATAAGTGGGCTGAGTTTGTTGGTTCTCTTATCTGACAGGTTGATTTGATTTGATTTTATTTACATGTAGTCTTCCCCAATAAAATTATTAGTAGGGCATCTGTGTTCAGTTAGAAAGATAGGAGACTTTAATACATGTAGCAAGTAGTTATTATTAAAGCAAATAAATCACCAGACTGTGAATTTGCAGCTTAATACATTTTGGAATTACTCGTACAATCCCAATACAAGGAAGTTTTGGTTGGACTTGGTTTCGCTCCAATTGCAACTTCTTTTCTTAGATCTGTATTGGTATTTGTCACTACTTATGCAGTAATCATATTCGTTTTTCTGTAGGATGAATATGGGATCTTAAAGTATCAAGACACATCAACAGGCAAACCAGTTGTTGATTTATACACAAAACTTGGAAAGTGTGACTGTATGACTCAAAATCCTTATAATGCTGTCATTAATTTGGGACACTATAATGGGACAGTGACAATGTGGGCACCAAATACAAAAGGTCCCCTTGTTAAGATGCTGTGTCACAGGGGACCTGTTCAGGCAATCGCAATAGACAGCAGAGGACTCTACATGGCAACATCTGGCTTAGATGCACAAATGAAGATCTGGGATGTAAGAACGTACAAGCAACTTCAAGCCTATTTTACACCTTCTCCAGCAAGTTGTCTTGCCATCAGTCAGCGAGGACTGCTTGCTGTAGGACATGGACCAAATATACAGATATGGCGGGATGCTTTCACCCAAAAACAGAAGTCACCCTACATGACACACCTCTTCCCATCCTGCACTGTGCATGGAATGCAGTTCTGTCCATTTGAGGATGTGCTTGGAGTGGGTCATTCACAGGGATTTGGTAGTATACTTATACCTGGGGCTGGAGAACCCAATTTTGATGCTCTTGAAGCCAATCCTTACCAGACGAAAAGACAGAGACAAGAGTTCGAAGTGAAAGCTTTGTTAGAAAAGATCCAGCCAGAGCTCATCACCTTAGATCCAATGGATATTGTATGTGTTAATCGTCCAGCAAAGAAAAGATCCAGAATGGGGGCCCAGAATGATGAGGATGATGACGAGATGACAAGTTCTAAAGAGAAGTTTGAACCAAAACACAAAACCAGAGGACGTAGTTCTTCGCAAAAGCAACATCTCAAAAAGAAGGTCCATGAAGAACAAAAGAAAAAGAATAAAATCAGACAAGCTGTGAAACAGAAGCAAAAAGAAGCACGGACTAGTAAAGTAAATGAGAACAGAGACCTCGATAAAGCATCTGCTTTGGACAGATTTCAGTCAAAGACAAAGTGAATCACTCTGCAGTTTTGTGTAAACAACACTGTGGCAAAATGGAAATACCCCCTCCATCCCAAAATCAATGATGAATTTGCACTCAAACGCTACGTTTTTTCCCATCATGAAATGTGGGAGGAAGGCTCATTTTTCATTTGAATTGACGTCTTCTTTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9P4X3	Probable U3 small nucleolar RNA-associated protein 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=utp7 PE=3 SV=1
Q5TJE7	WD repeat-containing protein 46 OS=Canis lupus familiaris OX=9615 GN=WDR46 PE=3 SV=1
Q9Z0H1	WD repeat-containing protein 46 OS=Mus musculus OX=10090 GN=Wdr46 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005689 (this species only)

Pfam domain

No Pfam domain signature was detected for gfas1.m1.1529.m1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR040315 all species →	Family	WD repeat-containing protein WDR46/Utp7	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14085 all species →	WD-REPEAT PROTEIN BING4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000462 all species →	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0030686 all species →	Cellular Component	90S preribosome	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gfas1.m1.1529.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.