Gene detail

Detailed information of gfas1.m1.1559.m1 in Galaxea fascicularis

Genomic Location: Sc0000046:257132...285618
NR annotation: XP_044175923.1, LOW QUALITY PROTEIN: uncharacterized protein LOC114952642 [Acropora millepora]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gfas1.m1.1559.m1

ATGGAGGAATACAATGGAGGCCTGCTGCATAAGGAGGAAGTTATGTTACGCAAGGCCATGTATGCCTCACTGAATGAATCCAAGAAACCTTCACCAAGCAAGCTTGCCAACCATCATTCTATAACAAGTGATGAAATGTCTGGCAGTAATGACTCTCAGTATTCCACCACTGTTGACTCCAAGCCTGAAGATAGAAGAACCTGTGTGCAGTCAATCACTCCTTGTGACTTTGATAACAATAATGGTGGCAGTGAATTGGGAAAGAGCAGCGACACAAATCACTCTGCCCTCAAGGTTTGTCCAGAGATGAAAAAGAAGTTTAGAGTGTCAAAGGAGCCGAGCAAACTTTTGAATTATGTCATCAAGAAAAAGAAAGAGAAAAGAACCAATTCCAGGGCTTTGTTGAGAACTTCGTCCCCAACAAAACTTTCAGAGAGCAGTGAAACAGGCTTTTCCACTTCTCTGAATGAGAAATCGAAAAAGAAAAAGAAAAGGCAAAGAGGTGCTCTTGCTGTATTTGTGGCAATGAACAAGTCTGCAGGTGGTAAAATACACAAGAACCATTTTTCTGGTTCAGACAAAGAACTTCTGTTAAAAGCCAAAAAGAAGAGGAGACGAAAGAGAAAAGTGTTGAATAATGAAGTTTTTAGTAAAACCGATGGTACAGGTATTGCAAATGAGGAATTGCCTGCCAAGAAACCAAGGAAAGATGACAAAAAACTGGTCAGAATGGTGCAGGTACAGAGGAAATTTGCAAAGAAGCATCCTTTAAGTCCATCCAGTATGAGAGTTCAGGAGGAAAGGAACTTGTCAACTTCTTTTGCAAGAGCCAAGACTGAGGATTTCTTAACATTCCTTTGTTTGAGAAATAATCCTGTTCTACCTAAAGAGCTTGAGATCTTCAATAATCCTTGTCTGCCAATGTCGCCATTATCAGATGACCGAGAAGACAATTCATGCCCACCTTCCCCTACACAGTCTCAGTCATCTATGTCAAATTTGTCAAACCCATCAAGTACCATCCACAAATCATTTTCTGATTCTCCTGCCCCATCGGTGGACAGCCCAGCCATGGGTGAGGGGCCTTCATGGGAGAGTGGAGTCGTTAGAATGTATGCTGATGGTCCTCAGGGACTTGCTGGCAATGGAAACGAGTTGAAAAAGTATGATGAGCTTCAACCTAGTGACGAGGCTGATGACCCACGAGAACTCATTAAATCTGTCACACCACCGCTTGCCTTCCGAGTTTCCTCGCGACCAACGAACTGGACAGGATGTAAAGGCAAGGACAAACAACTGCCAAGACCCATCCCCAAGCCCTTCGCTGTCAAACCATCTCTGACGGGAAATACAACCAGCGGGGCCTCATTCTCCCCCATGGTTACTGTTAACACGGGTAACAACGCCACTCCTCCTCCGCCGCGCCTTTTGCACCTCGCGGAGTCATCCTCGTGTTCCCCACCTCCGCCGCCCCTGCTGTACATCCCGGCTGCAGCTCAGAGGGTCACACATCTCCATGGCCCTCCTACGCTACAGCGATTTCCTTCAACATCACCTACACGGGAACAAGAAAGCAGTGAGCGAGCGGACCAGCAGAAGCTTTCAATTGATCGGAATGCTGGACCGCCGCCTCTGAAGAGATTCCCACCTGTTGTTGTTGAAAACGAAACCACTCAGAAGGGACAAGATTCAGACCGAAATTGTTCGAACGAACTGTTTTCAACGCGGAGCAGCTCTCCAGATATCCGTTCATTTACTTCGTTGTCATCCCTTAAAGCTGCTAATACCGCTTTAGGTAGATCAAGCAGTTCTCTATCGGACTTGACAAAAATCTCACAGTTGGAAAGAGAGACTGACGGAACAGCGTCCCGCTGGAAAAACAAAGAAATGCCTTTGTTAAGGAGGCACTCCTCTGCGAGCCATCATTCTGTGGACTTCGAGGACCGAGTGAACTTGCCTGAAGGATCAAGCAGCATCAAATCCAGAAGTAGCCCTCCTCAACTTCAACGCGTCTCCGTCACGCCGGACACGGGCCGACTTGAACTTTCTAACACTTCTGCTGGTCCATCTGAAATTTCCATTGATAGATTGGAAACTTCTGGCAGTCGACCTGTATCTTCTTGTAGTCGAGTGGATACTCGACGTGAAATATCTGACATTCCAGTTAAAGCCTCTAGCGCCGGAAGTGGATCTCCAGGTTTTCCGTTGGAAGCCTTCGGTGACCGAACTAAAACTTCCGTTTGTCGAATAGAAACGTCTGTTAGTGGATTTCAAACATCCAGTGATCATCTTCACACTTCCGGTAGTCCATTTGACACTTCCTGTAATCGTCTTTCGCCGAGCTTGCCGTTACTACCTCCGAGGCTTGTAAGACATTCACCGACCAGCCAAGGTCACCCGGATGCAAACCTTGCTTCACACCACGGTGACATACCAATTTCCGGTAACTCTGCTCAGCTACGGGCCTCACCACTAGCCTTGTCTACTCACAGAAACGGTCATCGAACGTTTCATGAAAATAACTACCCAAGGCCCGTTCTCGTTGCTGGAGCCGTGGCGGCTGACGGGAGGCCATCCCCGTTGCTGCTTTCCACTAAAGACAAGCATAAAAGTACTTATGTATTTTCAAACCGGCAGTCCTATTTACCGCCCGGAAACGAACCAAGACCTCTGCAAGTCAGCTCTTTGGTTATGCCAAGCAATTACAGCGTTAACTTGGAACCGAATCGTGCTGAAGGTCATTCAAGAGGTTTTCAATCAGTTGATAAAAGGCGGTCTTTTGAAGGGAACGGACTATACTCCATGCAGAACCAATGCGCGGAAAGTAATTCGTCGTCGCTTTTGTTTCGACCACACGAAAGCTTAAACGAGGCACGGAGGCAGTTCGGTGACTTCATGGGATCCGAGAGAATACCTTCTCCGAGATCAGACTTGTTCAGCCGAATCTCGCATGAACCAGTTAACCCCTCGTGTATGCCACGCGTTGGTGTCACGTCTACGGGTTCTTCGTCTGCAGGAGATCAACCTGTGGCTTTACGACCGACTATTCCGCACAAAGACAACACGCTTGAAAGCTTTCCGCCTATGTGGTCTCACTTGGAATCTCCTTATTCTGTACCAACCATCGCCGCACGAAATTCTCTCCCTAAACCATACACTTATTCTCCAAACTTGCCCACACAAGCTTCGCGTCATTTTCAAACTCAGTCTGTTGGTTTACGGTCGAATTCAAGCACGCCAGCTTTAGAAGGTTATTCGTTGACTCCTATCCAGTCTGCCAATCATCAACATGTGCCTGTTATTCAAAGCGCAAATTTCAACAAAGGAGAGTCATCTGATGGTATGCAACTCGGACTACATCAAGGCGAACATAAAAATTTAAGAACGTATCATTTACCGTCGGCTTTCCAAGCGGGCGATTCACGACATGATTCGAGAACAAACGCGACTCGCAGCGAATCCACATTTTCAAACACTTCAGCGAAAGAATGCTTGAGGCGGGAATTGTTCCTAAACGGTCGTAATTCAGCGGATTTGAATCCAAAATCATCAAGTCCGCTGCTAAGTCATACTGAACCTACTACAAGGTCTCCGTCGTTAAAATCACCAATTGTGAACAGGGACACCTCAAGCCCATTACTTCGTCATTCTGACCTTCATGCCAATCAAGCTTCGTCGAAATCACCCAGTTTAAAAGCAAAACAAAGCGACGTTTCGGAAGTAGCAGTTGCGGGTGATGTCACCCACCTTAAAACGTCTTGCCATTCTTCGGTGATGCCCGGCAAAAAACCGCCAGGTTCTAAGCAAAAGCAGTCGGTTGGTCCCTCGTCTGTTTTTCATCCCACGGAGGATGAATTCAAAGATCCAGTTTCGTACATTAAGATGATACGCCAAGAGGCTGAGAGGTTTGGTGTGTGTCTAATTGTCCCCCCTGAGTCATGGAAGCCCGAGTTCCAGATCTCTGACAACGTGAGGTTCAATAGCGAATGCCAACTCATTCACAGGCTGCAAGACAGGTGGGGTCCTGTGGAGGAGGAATTGGCGTGCATCAAAAAACATCTTGATCAGCAGTCCATTTCACTCACGCCCATGCCTCAGATTGGTGGATATGAGCTTGACCTACCTCAGTTTTCTAGAGTGGTCAGACAGTTTGGTGGACTTCAGAAGGTTATTGATAGTAAGAAGTGGACGAAAGTTGCCGACACATTGAAAATTCCCCGCGCGGCTCAAGACCGTATAGGCAAGCTTCAGGATATTTACTGCAAATATTTACTGTCATACGACCTCTTACCGCAGGACGAAATAGCTGAATTGTTACGACAAGTGCAATCACAAAAAGAAACCAAAGCCGAACAAGGCTCAGAGTCCTGGTCTGTCAAGGGCCGCAATCTTGCGTTGGTGCCGTTTCAAAGACTTGCTCGAAATGTACAAGGACATTTCTTCAAAAACCCTCCTTCAGCAAACGACGTAGAGAGGGAATTCTGGAGGATTGTTCATGATCGTGAAAGTTACGTATCTGTACATCGCGGAACTCTAGACACGAACCAAGAGCACAGCTGTTTTCCGACTGATAAAGGAGATCCCTATTCGAAACTTGAATGGAATTTGAATGTCCTTCCTCATTTACCTGGTTCAGTTGTCAGGCATCTTGGATCTGTTCAAGATATAACAGTCCCTTGGCTCCAGTTTGACATGCTGTTCTCAGTGAAGCCGTGGCAGGTGCATCCTCTGGCTTTCTACACAGTTGATTATCTTCATAGTGGTGCCGAGAAAATATGGTACAGCGTCCCTGGTGGAGAAAAGAACAATCTCGAGGCTCTTCTTCAGCAGGAGGAAGATAAAACTACGGGAACATCACCAACGGATAAGATGGTCTCTCCGAGCAGCCTGAAAGACAAAGGTGTGGCAGTTACTAGGATTGTGCAGAAACAGGGACAGTTCGTGATCGTTTTTTCTGAAGCTTACCACAGTACCATCAGCTGTGGCTATTCCATCTCTGAAACTGTGGCCTTCGCTCCGCCCGACTGGCTGCTCGTTGGTTCAAAACGTTACAAGGAACTGCAAGACCCATCGTGGCTAAACGAGTTCACTTATGACAGACTGTTGGTCGGCATAGCTCAAGAGGTAACTAGCCAAGATGACCGCATGTTTTGGGTTCGACTGGACGAGGAGAAATTCTTTATGACCGAGCTGCTTGAACTAGGTTTAGTTGAAACGGTTGACAAGGAAGAAAAATCTACGGGATCCTCAGGGAAGAAGGGCAAAAAGTCGCTCACAAGCTGGTCACAAGCTGATTCTAGCTGTGTCTTATATTGTGAGGAATGCGACCGACCTTGTTGCCTCTCAGCGGTAACAGGTGAAAACGAGCCTCAGGTGTTGTGTTTGAAACACGCTGTTGACCACATTCGCGCCAGAGCCTCGCCCAAAGGTTTCCGCATTTTGAGTAGATATGACACAGCTCACCTGGATGAACTCGTGAATAAAGTTGAAGACAGGTTAAAGAAACTGAAAGCTCCACCCACGTAA

Transcript

gfas1.m1.1559.m1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92833	Protein Jumonji OS=Homo sapiens OX=9606 GN=JARID2 PE=1 SV=2
Q5F363	Protein Jumonji OS=Gallus gallus OX=9031 GN=JARID2 PE=2 SV=1
Q1LVC2	Protein Jumonji OS=Danio rerio OX=7955 GN=jarid2b PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003837 (this species only)
Transcription factor family	ARID · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02928 all species →	zf-C5HC2	C5HC2 zinc finger	Domain	Interproscan
PF01388 all species →	ARID	ARID/BRIGHT DNA binding domain	Domain	Interproscan
PF02375 all species →	JmjN	jmjN domain	Family	Interproscan
PF02373 all species →	JmjC	JmjC domain, hydroxylase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036431 all species →	Homologous_superfamily	ARID DNA-binding domain superfamily	Interproscan
IPR001606 all species →	Domain	ARID DNA-binding domain	Interproscan
IPR003347 all species →	Domain	JmjC domain	Interproscan
IPR003349 all species →	Domain	JmjN domain	Interproscan
IPR004198 all species →	Domain	Zinc finger, C5HC2-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10694 all species →	LYSINE-SPECIFIC DEMETHYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11478	JARID2, JMJ; protein Jumonji	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.