Gene detail

Detailed information of gfas1.m1.15809.m1 in Galaxea fascicularis

Genomic Location: xfSc0000196:91439...118462
NR annotation: XP_029179510.2, LOW QUALITY PROTEIN: ras association domain-containing protein 2-like [Acropora millepora]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gfas1.m1.15809.m1

GTTGCCACCCTTATAAGGGTTGGTAGCTATATTAGGACATGTAATCATTTCCGTTGTCTGGTATTTGCCAATTCAGTACAGTTGTGCGCTCATTTATGACCAATGATTATAATTTGACTAATTTCCCTGACTTTTTACTTCTGGACTTCTTGAACGCGTACGTCGTTGAGGGCTATGAACCGTAAACATTTTGTTGATTTCAGATAAATTTCGTCTGGTTGCTATTTGTCAGTTGGTCACGTCGAGCTGAGGCGAAACAGAAAGTTTTTCGGCGTTTTGCGTTAAACACCTTTGTTACAGACAGCAGAGGAATTAAGTATTCGAGGTCAACTACTTGTGGATTCGAAAGGAGAATGCCTTCAATCTATCACGAACATTGTGGCAAGCCAGGACCCAAAAGTAATGATTATGTGCCGCCACCAGAAGCCCGGTTTTTCAAGTCACGTAGCGCACCTAATTCACCGTTGCTCGGCGAACGGAAGCCGCTTTTCCCGCCTCGGGCATCGCCGCGTACCCCTCGCGTGCTGAACCAAGTGTCGAATAAACTGGCAGCTGCCGCCAAAAGCTCAAAGCCCGGCAAAGTTGGACGAAGCAAATCTTTTAACAGCAAAGCTGAACAAAGGAACTCGCTTGGTAAAGTTTGGCACCCCGGTTGTTTGAGATGCGAAGAATGTGGCAAACGATTAAACCCGGGCCAACATTCTGAGCATAGAGGCATCCCATATTGCAATATACCATGCTACAGTCTATTGTTTGGTCCTGGGGGTTATGGTAGAGGAGGCACAGAATCTTATCAATATTTTGCAGATGAGAAACTTACCCCAGCAGAATTGGATGCATTAAGAAATGAACTTATTCCTAAATTGAAGGAGTATAACACATTCTTTGAGGGAAGGAAAGCTCTACAGTTAACGAGTAAAGAGGTTGGTGGTAGAATTATCCTGGAAGGGGTCCTCAAGGTATATTGGGGTTTAAAGATACCTGTCACTCTTGCAAGCCACAATTTGTCTTACTGGAGGAGACGCTCCCAGAAGGAACAAAATGGACTTATGAAGGGTGCGGCTATCAGAAACAAGGATTCTTTTAGAGCACGAACAAGTAGTTTGGAAAAGATTCTTGCCAGACGCCGTATCACAGTTAACAATAGGAATATACCAGATGCTGGAGACCAGAGGACAATTCTGGATTTCACAGTGCAGATTACTGATGCACCCCAAAACTTTAACCTCTATGTTGTTTATGATAATGGATCAATCAGGCAGCTACTGAAAGAAGAGTTTCCCTTGCATGTGCGACTTCTACTAGGCCCCAGTGAGGAAGCTGCCAAGATATTTGTAATGGAAGCTGATGAAACAAATAATATATCTCATGAGGTTGCACAGTACATCCATTTTGCAATGCCTGTGTTGCAAGCCTTCCTTGATAAATATCAAGAGGAAGAGGAAAAAGAAGTGGAAAGGATAAAGCAAAATTACATGTTATATCGGCAGAAATTAAAAGAGAGACTTGCAGAAATCTCCACTGCTGTATAACAAAGCTGTACTGGCAAAATAGTTTATTATTTTTATAAAATTTAAGTTGTTTTTATATTAGTAACTTATTATGAGTAAGGAAATATTTATTTGTAAAATTAAGAAATTAAAATTTAAAGCAACTCCTTTTAATATTAATTATGTGAATAGCTATTTTCAAGGTATTTGGTTCTCACCTAGTCCTTGGTCAAACAGAATGTGAATATTGAAATTTTATTTGCCAATATGTCATTTTGCTAATAATTGATTTCCAAGTTTATTTTGGGTAGATCAAGTCCTTTGTAGGGGCAAATGGTCATTTTAGGATGTAATTGAAATTTTGACTGTTTGCCCCCACAAAGGTCTGGATCTCCTTGGAACTGATCATTAGTTAAATGGTGCATTAAGGTGAGGGTTCTATTTAGGCTTGGTGGGACCTGGTTCTTCTTTGCTAGCTTGCGTCCTTTACAAGTTTAGACTTGTGAAAGAGGCGAGCAAGCAGCAAGGTTCTCTTGCACTGTGTGGGGCCTGGCTGGGTCCACAGTGGATACCAGGTTGTGAGAAATAGAAATGTCTTGATGCCAACGCCAATTGCCACTTGTTGATATTCTGGCATTGAGGGTTAAAAGCCGTAAATGTCATTGGTTGGAGCAGTCATATTAGATGAGGATACTGAAACTGAAAGAAAATAGCTCTCAAGAGGACCACAATAAATAACGATCATTATGTAACTTCTCCTTACATTATGTTGATGGAAAGATTGACCTATGGCACCTGCCTTTTTGTTGCCAAGATCCTAAGGGTTGATAGCCTTACTGGGGCTTCAATGTACACAAAAATTGATTGGATAGTTGAAAAAAATTTGTTTTAACATCTTGGGAGGCTTCTTTGGAAGATATTTAGTAAATAAGGTGCTTGATATCAATTTCCTTCATGGGTTAGTTACACAAAAATTATCTTTCTGGGGTATATACCCAGTAACTTCTAACTTGGTCCAAAATGTTTAATGAGCTGCACGGTTGACATCTGCAGGTAATTCTGACTTCAGATTTTGTCCAACAGGATTAGGTGTCCTGGATGCCTTTTTCTTGGGGTTTTAAAGTCATTTCCCAAGGATATCCTTTCTCTTTTTTCTTCTGTTTTAATAAATGCAAGGAAACCTTTTTCTCCAGCTGAGATGGTCTGATATCATATGGAGGGTCAACATATGATGGTCTTTCTTTCAGCCGAAACTATGAACCCATGTTTTCCGCTCCTTTATTTATGAATATGCTCCAAATCGTCTGTATTTTTCGTCTAGAGAATTGTATAACTACACGCAAGTGAAGCTTAGGACCAGTATTCATTTAATTTGGTTTGCGTTTTTTTTAGACGAAAGATTTTATGTTATAAGTGAAGTATAATTTCAAAGCTAAAAGAGTTTCCAGCAATCTAATTGGTTGAGCAGTTCAACAAAATGACACAGCCCCCGCTGGCGCATGTTCGAGCAATAAAATGCGTTGATTACCAATTTCTCTGTTGTTCAGTCCTGAAATTATATTTAAACAATTATTCCCCTTAGGCTCAGTGAACATTGTCTAAAATTTGTTAAATGTTAGTTTAGTCGCTGTAAAGTTCCGAGCCTCTCCAGAATGAATAATCAACAATGAGACCCGTGGCCCTTGAGGAGGAAGGGTCTTATTGTTTTAGTATCACCCAACTAGTCGGACAGAAAAGGCAAGAGGAAGCTTAAGCAACGACGACGGCGACGGCAACGAGAACGTCATTTCAAAATATGACTTCTGGTTTTCGTAACTTTTTCGTGATCGTTGCAATTCGTTTAACATTTCACGATGTTGCTTTACAGAGGACGGTAAAGAAATGTACCAAAATTTAAAACGCCCGTGCAGAGATTGTTTTTCCCCATTAAGCCCATTGTTTTGTTACGTTCTCGTTGCCGTTGCGGTCCTCGCTGCTTAAGCTCTCTAATAATAAAGTTAGCAAATGTAAGTTGAAGGAATATTTATTTAGAAATAAAACGAAAGAGAGCGTCATGCTCGTTGGCTACTCGAGGATTAATTATCACTATCAGTCCTACTAGCGTAGCCAATCAAAATACAGGATTTGCATTAGTCCACTAGTTTCGAGCGTCAGTAGTTATAACAAAACCTTCCTGAAAATGAAACCTTCAAATGTGAAAATGAGGACAGTTTGGAGTATATTACAGTAGAACCGATAAACTGTGTAACGTCAACTGAAATTGTAATTGTTATGGTAATGAGTCCAAAATTTATTGTGCATATGTTCTTTAAAATTAAATGAACTAAATAACAGCAGTTTTCAGTGTTTTTGATGACCAGAGGACATCCAGCTTGCAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P63254	Cysteine-rich protein 1 OS=Mus musculus OX=10090 GN=Crip1 PE=1 SV=2
P63255	Cysteine-rich protein 1 OS=Rattus norvegicus OX=10116 GN=Crip1 PE=1 SV=2
Q3B7D5	Ras association domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Rassf2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001125 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16517 all species →	Nore1-SARAH	Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain	Domain	Interproscan
PF00412 all species →	LIM	LIM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033614 all species →	Family	Ras association domain-containing protein 1-6	Interproscan
IPR011524 all species →	Domain	SARAH domain	Interproscan
IPR001781 all species →	Domain	Zinc finger, LIM-type	Interproscan
IPR000159 all species →	Domain	Ras-associating domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22738 all species →	RASSF	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09851	RASSF2_4; Ras association domain-containing protein 2/4	-	Hippo signaling pathway - multiple species	ko04392	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.