Gene detail

Detailed information of gfas1.m1.15872.m1 in Galaxea fascicularis

Genomic Location: xfSc0000203:27718...42811
NR annotation: XP_020616208.1, methyltransferase-like protein 13 [Orbicella faveolata]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gfas1.m1.15872.m1

ATGGCGTTAATTTATCGTTCTCCGGTCAACGCAAACCATAAAGAAAGTTATGAGGATTTGACAAAGGAGCTTGCGGGGTCTTCATTTTGTTACGGAGGCTACAAAGAACTGTGTGGTGTTCTCCATAAATACTGTAAGACGAGCGATCATATTTTAGCTGCCGGTTTCGCGTGTGACAGACAAGACTGCTCCTTAATCGAAGATTTCTACGATGCTGGATATCACTCTGTTGCTGTTGTGGACACCTCGGAAACTCTTGTTTGCAGCTTAAGAGAAAGAAATAAGGAGAAACGTCCAGAGTTGCAGTTTGCTGTAAGACAAGTAGACGATGTGAAAGCTGAGTTTGAATCAGAAAGCTTTAGTGTTGTGATTGACAGAGGAGTACTTGATGCAGTACAAAAGGGAAAGTCAACCAGCCAAAGAACTGACTCAAACACTATAGAATACTTTGAAGAAGTGAAGAGACTTCTTAAAGTTGGAGGTCGCTATTTATGTTTCACAGTTGCAACTGTAGAAATTCTGGACAAATTGCTGGATTATTTTTCATCAGGGTGGTTTTTCAGGGTGCATCTATTAGACATGCAAACTTCTGTTGGACATCCAGTGTACACACCATTGTTTTGCTTTGTTTTGACAAAGACAAAATTTACAGGATCATCATCTCAATCCTTACAAATCATAGAAATGTGTCTGGATGGAACAGAAAAGATTGAAAGATTGAGTAATTTTTCCGTCATCAAGAGAACCATTCAGGAAATTCAGCAGTATTTTGTCATGAAGAAGACATTAGAAAAGTGTTGTGCTGGACAGTATTTTAAAGTGGACTTATATTCAGCATCAGGAAGTCCAAAACAAAGAGATGATGCTCGCTACTCACTGACAGTTGTAGACATACAATGCTCATCAGCAAAGAATGGGAAATTTGCAATATTCATCATACCACAAGGCAGGGAGACAGAGTGGCTTTTTGCATCCTTTGACGGACAAAATGAACTTGCTAGTAATGCTGGTTTTGAGCGCCTTGTCATAGCAGCTCTTGGTAGAGGACACTCTTTTATTGACATGGACACAATAAAGAAGGAACTGTCAACTAAAGTGATGGAACTTGCACCTAAAACCCTTAGCCGGAATGCTCAGGTACCTTTCTTGTCAGTTGGAGAAGATATTGGAAATCGTGTGGTTTTACTTGAAGGAACGTCAGTGCTAAGTGGTGATTATGTTGTGGAAGATGTCGATGGTGATGATAAAACCAGTAGTAAAAAGAAGAAAAGGAAACCAAAGGCACAACCAGTTAATAGCGCCAGCTACCGAGTGGATCATGGTTATTTAGCGTGTGAACACCACAGGGTCATAATCACAGGTCTGGCTTGGATTGAAGGGTTTGTCACCACAGGTGAAACAAAGAGCGGCTTGATAGTTGGCCTTGGTGGAGGAGGACTCGCTATGTTCCTTTATCAGTACTTCAAACAGCTCTCCTGGGAAGTCATTGAACTGGATCCGTCCATTTGCGAAATTGCCAAGAGCTGTTTTGAATTTAAAGAGGACGAGCAGATGAAGGTGATCATTGAGGACGGTTTGAAGTATATTCAGTCAAAAGAAAGCCAACCCACTTATGATGTGATTATTTTTGACGTGGATTCTAAGGACATCAGCGTAGGAATGAGCAGTCCTCCACAAGCATTTGTTGATAAAGTGTTTCTCGCCCAAGTTCAATCCCTGCTAACTCCTTCAGGCGTTTTTATTCTCAACTTGGTTTGCCGCAGCACCACCCTCAGAAAACAAGTTATGAGCGATATTCACACCGTGTTCCCAGAGCTGTACAGTATCAAGATTGAAGGAGAAGTGAATGAAATTGTCATGGCTTTGCCAAGTTCCAGAGAACAAACAAAAACACAAGACAATAATCCTCTGGAAACGCTGAGGGCTTCATTCCGAAAATCAGTGAAGGAGTTAGAGATGCTAGCCAAGGGCCAAGGACACCCGTGGGACTCAACCCTTGATTTGTGTGAACTTGTTCAAAACCTTCAAATTGAATAG

Transcript

gfas1.m1.15872.m1

GTGACACAAGAGGGGAAACGTGGAGGATACATTGTACCAGCACTTGACTGTACAGTGTACAATTTAGCTACAATAGTTCTAAAGGCCACTTATGGCGTTAATTTATCGTTCTCCGGTCAACGCAAACCATAAAGAAAGTTATGAGGATTTGACAAAGGAGCTTGCGGGGTCTTCATTTTGTTACGGAGGCTACAAAGAACTGTGTGGTGTTCTCCATAAATACTGTAAGACGAGCGATCATATTTTAGCTGCCGGTTTCGCGTGTGACAGACAAGACTGCTCCTTAATCGAAGATTTCTACGATGCTGGATATCACTCTGTTGCTGTTGTGGACACCTCGGAAACTCTTGTTTGCAGCTTAAGAGAAAGAAATAAGGAGAAACGTCCAGAGTTGCAGTTTGCTGTAAGACAAGTAGACGATGTGAAAGCTGAGTTTGAATCAGAAAGCTTTAGTGTTGTGATTGACAGAGGAGTACTTGATGCAGTACAAAAGGGAAAGTCAACCAGCCAAAGAACTGACTCAAACACTATAGAATACTTTGAAGAAGTGAAGAGACTTCTTAAAGTTGGAGGTCGCTATTTATGTTTCACAGTTGCAACTGTAGAAATTCTGGACAAATTGCTGGATTATTTTTCATCAGGGTGGTTTTTCAGGGTGCATCTATTAGACATGCAAACTTCTGTTGGACATCCAGTGTACACACCATTGTTTTGCTTTGTTTTGACAAAGACAAAATTTACAGGATCATCATCTCAATCCTTACAAATCATAGAAATGTGTCTGGATGGAACAGAAAAGATTGAAAGATTGAGTAATTTTTCCGTCATCAAGAGAACCATTCAGGAAATTCAGCAGTATTTTGTCATGAAGAAGACATTAGAAAAGTGTTGTGCTGGACAGTATTTTAAAGTGGACTTATATTCAGCATCAGGAAGTCCAAAACAAAGAGATGATGCTCGCTACTCACTGACAGTTGTAGACATACAATGCTCATCAGCAAAGAATGGGAAATTTGCAATATTCATCATACCACAAGGCAGGGAGACAGAGTGGCTTTTTGCATCCTTTGACGGACAAAATGAACTTGCTAGTAATGCTGGTTTTGAGCGCCTTGTCATAGCAGCTCTTGGTAGAGGACACTCTTTTATTGACATGGACACAATAAAGAAGGAACTGTCAACTAAAGTGATGGAACTTGCACCTAAAACCCTTAGCCGGAATGCTCAGGTACCTTTCTTGTCAGTTGGAGAAGATATTGGAAATCGTGTGGTTTTACTTGAAGGAACGTCAGTGCTAAGTGGTGATTATGTTGTGGAAGATGTCGATGGTGATGATAAAACCAGTAGTAAAAAGAAGAAAAGGAAACCAAAGGCACAACCAGTTAATAGCGCCAGCTACCGAGTGGATCATGGTTATTTAGCGTGTGAACACCACAGGGTCATAATCACAGGTCTGGCTTGGATTGAAGGGTTTGTCACCACAGGTGAAACAAAGAGCGGCTTGATAGTTGGCCTTGGTGGAGGAGGACTCGCTATGTTCCTTTATCAGTACTTCAAACAGCTCTCCTGGGAAGTCATTGAACTGGATCCGTCCATTTGCGAAATTGCCAAGAGCTGTTTTGAATTTAAAGAGGACGAGCAGATGAAGGTGATCATTGAGGACGGTTTGAAGTATATTCAGTCAAAAGAAAGCCAACCCACTTATGATGTGATTATTTTTGACGTGGATTCTAAGGACATCAGCGTAGGAATGAGCAGTCCTCCACAAGCATTTGTTGATAAAGTGTTTCTCGCCCAAGTTCAATCCCTGCTAACTCCTTCAGGCGTTTTTATTCTCAACTTGGTTTGCCGCAGCACCACCCTCAGAAAACAAGTTATGAGCGATATTCACACCGTGTTCCCAGAGCTGTACAGTATCAAGATTGAAGGAGAAGTGAATGAAATTGTCATGGCTTTGCCAAGTTCCAGAGAACAAACAAAAACACAAGACAATAATCCTCTGGAAACGCTGAGGGCTTCATTCCGAAAATCAGTGAAGGAGTTAGAGATGCTAGCCAAGGGCCAAGGACACCCGTGGGACTCAACCCTTGATTTGTGTGAACTTGTTCAAAACCTTCAAATTGAATAGTACTGCTAATAAGTGGCCTCTGAAAAGTGCCTGCCTGGTGAAGGTGTGACCTGACGCCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NTR1	eEF1A lysine and N-terminal methyltransferase OS=Xenopus laevis OX=8355 GN=mettl13 PE=2 SV=1
Q8N6R0	eEF1A lysine and N-terminal methyltransferase OS=Homo sapiens OX=9606 GN=METTL13 PE=1 SV=1
A5PK19	eEF1A lysine and N-terminal methyltransferase OS=Bos taurus OX=9913 GN=METTL13 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006733 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08241 all species →	Methyltransf_11	Methyltransferase domain	Domain	Interproscan
PF01564 all species →	Spermine_synth	Spermine/spermidine synthase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR013216 all species →	Domain	Methyltransferase type 11	Interproscan
IPR051419 all species →	Family	Lysine/N-terminal Methyltransferase Superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12176 all species →	SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008757 all species →	Molecular Function	S-adenosylmethionine-dependent methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25166	EEF1AKNMT, METTL13; eEF1A lysine and N-terminal methyltransferase	EC:2.1.1.-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.