Gene detail

Detailed information of gfas1.m1.16064.m1 in Galaxea fascicularis

Genomic Location: xfSc0000225:1104...10507
NR annotation: KAJ7377119.1, Leucine--tRNA ligase, cytoplasmic [Desmophyllum pertusum]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gfas1.m1.16064.m1

AGATGGCCTAGAAGTGTAAGAGCCAACGGGCATTTACTGCTCAACTCTGAGAAGATGTCAAAGTCTACTGGAAACTTTCTCACCCTGAAGCAAGCTGTGGACAAATTTTCTGCGGACGGTATGCGTCTGGCCCTTGCTGATGCTGGTGACACCATGGAAGACGCCAATTTTGTCGAAAAGGTGGCTGACGCAGGAATTTTGCGTCTCTTTACCTTTCTTGAATGGACAAAGGAAATGCTGTCCTGCAAAGATTCGCTGCGCACTGGGCCCACAGATTGCTTTGATGATCGTGTCTTTGAAAGTTCTATTAACAAAGCCATCGAAGACACAGATAGTAACTATATGAACATGATGTACCGAGACGCGCTCAAAACCGGCTTCTACGAGCTGCAGGCTGCAAGGGACCGATACAGGGAGAGCTGTATGGCGGGCATGCACAAGGCCCTGGTGTTTAGGTTTATTGAGGTCCAAACGCTGTTACTGGCTCCGATCTGTCCTCATCTTGCAGAGCACCTCTGGGAGCTGATAGGAAAGAGTGGAAGCATTATGGACGCCTCGTGGCCAGTCGCAGGGAAAATCGATCAGCCATTACTGAAGTCAGCTAATTACTTAGAAGATCGTGCACACGAATTCCGTGTGAGAATCAAGGCCATGATGAATCCTAAGGGAAAAAAGAAAGGTGCAGAGCCACCAGCAAAACCAACACACGGAATCATCTACGTGGCGAGCGGTTATCCACCATGGCAACACGCCACGCTCAACATACTCAAGGAGATGTACAATCAACTGGACGGAAATTTCCCCGACAACAGGGATATTATGAACCGGATGAAATCGGTACCGGAAGTCAAAAGCGCCATGAAGAAACTCATGCCATTTGTACAACACGTGAAGGAATGTGTGGAGCGTGACGGTCCTTCGGCTCTGGAAACTACCCTAGCGTTCGATGAAAGACAAGTTCTTGAGGAAAACAGGCCTTTCCTTTCTAAAGCCCTGGAGCTGGTGAGCGTAGAAATCAAACCGTCAAGTGAAGCAGACAAGCGAATTCAGGAAGACTATGCTCCGGGAAAACCGTTCTCTGTGTTTACAACTGAAGGAAATCCGGAAAATGTTGCCAATGGTGTTAGTTCTACAACAGAAGCATCAGACAAGTCTCCCCTTTCAGCTGAGACACAACCCAACACCTCCCCTGTTTGTCGGTTTGTAAACATCAAGCTCTGTGGAATTGACCCTGCCTACGGTGCCAAGGGGCATGAAGCTACGGTGCTGTTAGAGAACCCACAGGGAGAGAACATTCTGAACTTGGACCAGCTTGCAAAGGAGGTTCAAACGGTGTTCGGTTTAAGAGGACGAAAAGTTTCTCTGTCGGCATCAGCCAATTGCGATTCTGAATTGACACAACAAGACGTCATGAAGTACAGCGGACAGTGTCTCTATGCTTTTATTCCAAAGAAGTGAAAGCGAATCTGCATTGAATTACCGTGACCTTTGCATTAATTAATTAACTGAAGTACAACTAATTAATTACCAACCTAGACATATAGACAAATCAGACTTGTTAACTTCTGCCCGCAGTGAAGAGTCTTTCTACGCGTAGACGGGTTGATGAAGAGTTCTTGCACAAACTCCTTGTGTGAAAGACCACTTACATGCATGATATTTGGGTTCAGGCGAGTCACTCTTCTAGTCCGAGGTATCTCTCTTCGCTGTGATCACTTACCAAGCGTTTGACAGCAAACCTTACAATCGAGCCTGCAGAAGATTTCTTCCAAGTCTGACCCACTTGTTTGTGATACTATTTAGCAGTATTTATTCTCTCTTCGGAGTAAAAGGTTGTACGCAAAGCGCGCTATGTAAGGGGCTGTCATTTAGCCTCTCACACTTTCTACACCACTAAGATGCAAGAAACAAACAAAATTGACATAAATTGTGATTAATTTTTGCTGAAACTCTTGCATTTTCGGTTAAAAAATGGGGCCTGAGGCCCGTTTCTCGAAAGTCCCGACTTCCGCCTATTCTGAAAAGCTGGCTTTTTACTATGAATTCGAGATGAGAAAGGGCAAAAATTTGTTGCAAAATTACATTCCTGAAAAGGTCTTTGTTTTTGAGATATGCAGGAAATAATGGTACCCGAAATAGGCCCGAAAAATATCGAGGGTTTCGAGAAACGCACGGCTGAACCTTGGGCTACAAGATACAATAATTAATGTCATACACTATTAGTATCACCTAACTTGTGGACTAATGCAAATCCTGCATTTTGATTGGCTACGCTACTAGACGACTATTAGTAATAGTCCTCAAGTAGCAATCGAGCGTGACGCTTTCTTTCGTTTTATTCCCAAATAAATATTTCTTCAACTTGCATTTGCTAACTTTATTATTGCCTTTTCTGTCCGACTAGTTGGGTGATACTAAAACAATTAGACCCTTCGCCTTCAAGGGCCACGGGTCAATAGCCCATTCGGCTTCGCTTCATGGGCTAGTGACCCGTAGCCCTTGCGGGCTACGGGTCTAATTAGCGCCGTGTAATTTTATGGGTTTCTACTCTTTGCGCAAGTATGCCATTATCCTGCAAACGAAATTATTTCGCGGAAAACGCGTATTTTGTAACATTCTCATATATTTTCAATTAGTAAATAAAATAAAAAAATACCATAGGCTTTTTAAGCTATTGTCCTTTCACTCTCGATGGATAAATAAATCCTGATCGTTGTCATAACACACTTTCGAGTTGAAAATGAGTCGACTTTGAAGTTATTAAAAGTAGTTCATAGTTATAATTAAATTGCTTGCCAATAATTATTGTAGCTTCAATAAATATTCGTGAAAGAATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9P2J5	Leucine--tRNA ligase, cytoplasmic OS=Homo sapiens OX=9606 GN=LARS1 PE=1 SV=2
Q8BMJ2	Leucine--tRNA ligase, cytoplasmic OS=Mus musculus OX=10090 GN=Lars1 PE=1 SV=2
Q5R614	Leucine--tRNA ligase, cytoplasmic OS=Pongo abelii OX=9601 GN=LARS1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002125 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09334 all species →	tRNA-synt_1g	tRNA synthetases class I (M)	Family	Interproscan
PF08264 all species →	Anticodon_1	Anticodon-binding domain of tRNA ligase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004493 all species →	Family	Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic	Interproscan
IPR015413 all species →	Domain	Methionyl/Leucyl tRNA synthetase	Interproscan
IPR013155 all species →	Domain	Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding	Interproscan
IPR009080 all species →	Homologous_superfamily	Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45794 all species →	LEUCYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004823 all species →	Molecular Function	leucine-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006429 all species →	Biological Process	leucyl-tRNA aminoacylation	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gfas1.m1.16064.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.