Gene detail

Detailed information of gfas1.m1.17536.m1 in Galaxea fascicularis

Genomic Location: xfSc0000444:56204...74905
NR annotation: XP_020600839.1, alpha-L-iduronidase-like isoform X1 [Orbicella faveolata]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gfas1.m1.17536.m1

GCCAGCCAATCAAAATCCTGAGCCAGGGCGAGTGGTCGGCGAGTGCGAGTCAAGTGCGAGTCTCCTTTCGCTCTTCCCCATTGCCTTCGCGGTATTTATATGGCGGTCAGAGTTGCAGCTGTATCGTCAAAGCGTAATTATGAATGTACCATTCTAGATCCATTCTGTATGATCGTAAGTCGAAACGAGAGAGGGATAGACGCGTGTAGTAGTAAACTCCCATTTTGGTGAATGCTTCAGAACATTACAGGGTAGTCAACAAGGTCCTGTTGCCATCACGGAGTTGGATTACATTACACAGCATTACATCAAATGATAAGTCACACAATCCGATGTCTCAAAGGTAGTGGTCGGCATGTTTTGGTTGAGAGCATTCTTTAGTGTGCTATTGATCCCATGGATAGCTGCAGAACAAGTTGACAGTGTTTATGTATCGTTGGACGCCAGTGCAGTCGTTGGTCCATTGCGACACTTCTGGGAAAGCACTGGTTTTTGTCCTCCTGATCCTCATCAAGATTTCTACAAGTTCCTCTTCACAAACGACGAAATGCAGAACTTGGCGTACATTGGTTCTGTGCCTAAACAGGGAATAAAACAAGTGCGAATACACTGGCTATTAGATTTAGTTTTCGTGGAAAGGACAGCGGGAAAGCTTGCAGTTTATAACTTTTCATATCTCGACAGGGCCATACAGTTTTTAATCGAGAACAATTTGAGGCCAGGATTTGAACTGATGGGAAATCCATCAAATTTCTTTTCAGATTTTGATGACATTACACAGATTTATGCGTGGAGGGACCTTGTAGCAAGTCTGGCAAAGCATCTGATAGAGGTGTTTGGGTTAGCTGAAGTGTCACAGTGGAACTTTGAGTCTTGGAATGAACCAGAGAACACAAAACATTTTGATGGTCTGCATGTGTCTACCAAAGGTTATCTTATGTATTATGATGCATGTTCTGAGGGACTGAAGATGGCTCATCCTTCCTTGCGGCTTGGAGGACCTGCCACAGGATACCCAGACAAGCACCCAATATTCTGGTCTTTACTACAGCATTGCTACAATGGTACTAATTTCTTCACTGGTGAAAAAGGTATAAGGTTGGATTTTGTATCATTCCACATCAAAGGCCAAGGACACTCTATGACCATTTTACAGAGTGAAATAGTAACTCTAGAGGAAATAGCCCATATGTTTCCAAGGTATAAATTTATTCCAGTGTATAACGATGAAGGGGATCCACTAGTTGGTTGGAGTTTGGCTGAAGAATGGAGAGCCGATGCAACTTATGCAGCTATTGTTGTCAAGATACTGGCAATGCATCAGGAGATGCTGCTGAACAGCAATTTTAGTATCAGTTATAACTTGCTTAGTAATGACAATGGCTTTATCAACTTTGCACCGTTGTACTTCCGTCAGCGCACACTATTGGCCAGATTCCAAATGAACCATTCCCATCCGCGTAAGGTTGAATTTGTCAAGAAACCTGTTTTGAGCGCGATGGGTCTGCTAGCTCTTTTGGGTGATCAACAGATCAAAAGTTGCGTGACATCTCAAAACGATGACGATGATTTTGGAGCGCTAGCATCTGTCCGTACGCCTCAAGAATTTTCCAATACCACTGACTGGGAATTGGCAGCTATATTTTACAACAGCAATGATACATCAGGGAGAACTTCCAATTCCCAAGTAAACATGTCTATAGCGAATTTACCACTGAGAAAAGAGTTGGCGTTTGTTGTGTATAGTCTGGATAATGGCCATGGAAGTCCATTTCAAGTGTGGCAGCAGATGGGATCTCCGGTATTTCCCACTGATGATCAGTTTAAAGAGCTCCGTCTTCATCAGGAACCCGTCAGAACTGTGGGCCCTACGATTTTGTCTTCCCATCAACATTTCAATCATTTGTTAATGCTTCCGTTGCCTGGAATAAGTATGGCGCATATTTGTGCGAAGACTATTTCATCCCCTTCTAAGGTCGAAGGAGTAAAGCTCATCACTGTGTCTTCCTACGAACAACTTGTAACTTGGAAAGACGTTCAATCAAGGTGCATTCTTTCTTTTGAAGTTTTATACTCTGTTAAAAGTCCCCTTGGGCCATTCAAACGAGTAAATGAAGTGGATATCATCTTTACAAGCTTCCACCATGTGCTGTCTCAAGAGGAGAGGAGCTTCCCTGAAGGCTGGTATGTTATTGTAGCGGTGGATTACTGGAGACGGCGCAGTCCTACCTCACAACCTGTAGCAATTAACAGATCTACCGAGTCGTGAACAAGCCGCTTTAATAATCCAGACTTAATTCCACAGTGATGAATTAGAATAACGCCATGTTGGAGGTAGAAACGCAGATATTCACGCTTCCTTCAAGTCTTGTAAATGTCAACTCTAAAGAAGTAATAGCTTTGATTTTTTCTTATTCACTTTCACTATCAGCCTGATGTTGGTAGTTGTTCAGAAAACGCAGTTTGACAAGTCCAACTAAGGCACTTTTTGGTGATAATGATTGTTCCGGGTAAATTTGCTTCTGTCCAGGTCCTTCGCCTTATAATTACATAGTTTCAACGGAATAGCAGACTAAACCTCTTTCGTTACCTTCCCATACCAGCATAGTAGATCTTTACAGGTGTTCAGTATACACACTGTCCAAGTCCAAGAATAGAAATTTTGGTGATATTTTTATACACGATGAATTGTAATTAAACAAAATAATTAAAAAATACCTATTTTGTAAACTTCTCAAACCAGCTTGAACTTGGTTGTTGTTTCAGAACACACAGGGTTAAAAATCCCAGTGAGCAATTGTTTATATTCTTGGCAGTCACAACTCAAACGATGTTAGAGGATTCCGCAATAGGTTTTCGGGATTCTTGGCTAATTTAGAGGTCGGGATTCGACCTTGCGATAGCCACCTGTGTCGTGATCGACAAGTGAGAGGTTGAAGCAACACGTGTGATCAGTATGAAGCCCAATGTAATACAGAGAGTTACATCTAAATCGGCTAAGAATTGACAGAAGTTGTTGGCATGCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P48441	Alpha-L-iduronidase OS=Mus musculus OX=10090 GN=Idua PE=1 SV=2
P35475	Alpha-L-iduronidase OS=Homo sapiens OX=9606 GN=IDUA PE=1 SV=2
Q01634	Alpha-L-iduronidase OS=Canis lupus familiaris OX=9615 GN=IDUA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007691 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21200 all species →	Glyco_hydro_39_C	Alpha-L-iduronidase C-terminal domain	Domain	Interproscan
PF01229 all species →	Glyco_hydro_39	Glycosyl hydrolases family 39	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049167 all species →	Domain	Alpha-L-iduronidase, C-terminal domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000514 all species →	Family	Glycoside hydrolase, family 39	Interproscan
IPR051923 all species →	Family	Glycosyl Hydrolase Family 39	Interproscan
IPR049166 all species →	Domain	Glycosyl hydrolases family 39, N-terminal catalytic domain	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12631 all species →	ALPHA-L-IDURONIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01217	IDUA; L-iduronidase	EC:3.2.1.76	Lysosome	ko04142	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of gfas1.m1.17536.m1 across 22 RNA-seq samples of Galaxea fascicularis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

22Samples

13TPM > 0

4Conditions

27.2Max TPM

11.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
coral holosome · Control	7	4	10.52	23.55
coral holosome · 30ic treatment	6	4	14.36	22.75
coral holosome · Prometryn (herbicidess) treatment	5	2	6.34	18.43
coral holosome · Prometryn (herbicidess) and 30ic treatment	4	3	17.66	27.24

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27118487	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	23.55
SRR27118486	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	20.61
SRR27118480	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	18.87
SRR27118491	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	10.60
SRR27118485	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	0.00
SRR27118488	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	0.00
SRR27118492	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	0.00
SRR27118478	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	22.75
SRR27118476	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	22.00
SRR27118479	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	21.41
SRR27118466	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	20.00
SRR27118468	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	0.00
SRR27118477	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	0.00
SRR27118481	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	18.43
SRR27118469	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	13.30
SRR27118482	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	0.00
SRR27118483	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	0.00
SRR27118484	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	0.00
SRR27118472	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	27.24
SRR27118475	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	24.74
SRR27118490	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	18.69
SRR27118489	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	0.00

Source: CnidoSite RNA-seq expression matrices (GFASC_TPM, StringTie quantification over 22 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.