Gene detail

Detailed information of gfas1.m1.17558.m1 in Galaxea fascicularis

Genomic Location: xfSc0000448:36021...41125
NR annotation: CAH3028721.1, unnamed protein product [Porites evermanni]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

gfas1.m1.17558.m1

GCAATATATTTCTTCATGGGGCGCTTGCCGAACTCCTATTTCGTTCAATATCTTGATGTAGCAGGTTTATAGAATTGTGATTAAAGTAAATCACTTAAACAGCAAACATCACACGCAAGCAAAGCTCAAGTACTTAATTATTTCTCTTCTTGTTTGAAAACCAATATCACATCTAAAACCACACTTCAGAACTTCGCGTGTGATGGTCAAATTATTAAGTTTGTTGAGATTTCTGGAGCAAACGTGTCTGCCTAAACAGATTTAATAATCATTCATTAAAATCTCTTCTGGAGATAATTTTTAAATAAACACACAGGGCGTAAAGACAGTCTATTTTTGTCGTTAACGCAGTCAACAGAAAATTTTTACGTCTTTTCTGTGAACGCCCTCGGTCGCCGTTGCGTTTCTAACAGAACATTGAATCCAACATAGAATCAGAGAGGAGCGAAATGAAAGCGGTGTGATTATCTATTGTCAATCAAAACAAGCACCTCTTTCTTTTCATTTAATGTGTGCTCCACATTCTCCTGGCAGCGTTCATTAACAATTAGCGTTTCTTGAGTAATCACCGCTCTGTCACGGCTAACAAACAACCAGCCAATTTCAATACAATATCGGAACATAGAAAATATTGAGTTCTGTGTGCTGATTGGACGGCCCACGGTTATCTAGATATCTTAAGCATTATTTCGCCCGCCTAGTCCTGTTAATTCGCTGTTAGCACGAGCGGACCAAGTATTTTGTTAATAGATTGCGGGTCGATAGTTTAGTTCGTGCTCCGACATCTCAGCGGCAATGACCAGAATGAGTTCAACTGTCACCAGAGATTCAGCGTCTCCTAAGAACGATTTGATGTCCAGTGAGAGGCATAGTGAAAACGCCGTGGACGATGTTTGTCACTTCATAGGCTCAACTATGAAGCGCAAAGCTGAAGGAAAGTGTGGCTCACCCACAAGCTCTAAAGACAGCCACAGTGATCGCGATTCAGATTATGAAGATTCAAACAGCGAACACCATGATGAATGTAACGAAGGCTCGTCCAAAAAGAAACACCGAAGAAATCGCACAACTTTTACGACCTTCCAACTTCACGAACTGGATCAAGCGTTCGAGAAATCGCACTATCCAGACGTGTATACAAGGGAGGAACTAGCACTCAAGATCGATCTTCCTGAAGTTCGAGTTCAGGTCTGGTTTCAAAACCGAAGAGCAAAATGGAGACGCCAGGAAAAGATGGAAATGGCGTCTCTTGAAAACCTGCCGTCTCCAACTCTCCCGCGGGCTAATTTTAATAGTCTTCCTTTCCCTGACCCATGGAAAAGCTCTTACACGTACCCTCCGGCCTTTGGCGGAGCGCTGTACCCCCCGAGTACCCTCGCAACGTCTCCCACAATGGGATGCTATCCGGGTTCGTATGGCCCTACGAGTTACATTCCATTTTCATCGTATCTGTCGGGTGTAGGATGTATGACCGGGTTACCCCAGGGATCCAGAGACGATAGGACAACGAGCATCGCTTCCCTAAGAATGAAAGCTAAGGAACATATTGAGAGCTCCAGCCTTAAGGAGTGGACGGAGTTGCCTACTGCCACACAGTGAATAAGAAATCAGTGATAGTAATTAAGAAAGGCGGTCTTTCATGCTCAAGAATTACAAAGCTGGAATAGACTATCAACATTCTAAACAAAGCACTCAGGAACAGTTCCCAAAACAAAGTTTGACAGTTTTCATTCGATTAGTGACACCCAGTTTACTGTTTTATTAACCAACTCAAGAATGGAGGGTTTACGAAAGAAAAAAAATATATATATTGTAGAGAAAAATTTTTAACTAAGTGCTGAGATTTTTGACAAAGTTGTGTTTTTAAATTTAGTCACGTAATTCGTGAAATTACAAAAATGTCTGAAATTGCATCCACGACTAGTATAACAATCTTGAACGGACAAATAATATTGACTGATGCTGCTATCTTATAGATCGCACTTTGCTTCTCGAAAACTATGCAGTTTTATGTTATTTAAGTAGAAATTTGACAAAGTTGTGTTTAAATATTTGCTTTCTTGCAGATTTCTCAAACTGATATGTGTACACAGCTGAAGATATTTGACTAAAAACGTATGCAAAGCGTGGCTAACTAGTGACTAAATAGGTTTCATTCTTTGATCATGAAACATTTCCTTTCCCAAAATTGATATTACACCTTGTATTGTGCGTCTGTAGTTCAGAATAGCGTCTCGATATGAAACACCCATAACCGGTCTATCTTATCAAATAAATTATGCATTCATTCATGGCTAAAATTATCGAAAGAAAGACTGAAAATACTTTTTTTAAGACTGAAAGATTCTTGGCATCTTTCACAAATACTATTTATCGCCCACGTTTTATTCATATTTACGCCATGCGGCTGTTGATAAATGATTTGGAGCAGAAAGTATTGACTAGGATTGGCAATCAAGATCCCATAAACACAAAAACAAGGTCTGAATGAGGCAAGAAAAAAAGTATATGAGAATAAAATTCACTTTTTCTCTTGATGTAATTTATTGTAGGCCATTTCTTTTAGTGATGAATATTTATCTTTCTATCTAATTTAAATTCATGTTGTTATTCATGATAACACAGCTTTGTTGGTCCGCGTTAAAACTTCCGTATTCTTGTGGTCTCGTTGAGATCAACGGAGAAAATTTAACTTTTTCTTTAGTGGGAGCTGAAGTGGTAAATTGAAGACATTACTCTGTATTTTGAGTTGTAAATTATGTATCATTAAAACTCAGTGGAGG

Protein

Uniprot

Gene family

Uniprot term	Description
O42567	Retinal homeobox protein Rx-B OS=Xenopus laevis OX=8355 GN=rax-b PE=2 SV=2
Q9I9A2	Retinal homeobox protein Rx2 OS=Oryzias latipes OX=8090 GN=rx2 PE=2 SV=1
O42356	Retinal homeobox protein Rx1 OS=Danio rerio OX=7955 GN=rx1 PE=2 SV=2

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF03826	OAR	OAR motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR003654	Domain	OAR domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR043562	Family	Retinal homeobox protein RAX/RAX2	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46271	HOMEOBOX PROTEIN, PUTATIVE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09332	RAX, RX; retina and anterior neural fold homeobox protein	-	Transcription factors	ko03000	deepkoala