Gene detail

Detailed information of gfas1.m1.17705.m1 in Galaxea fascicularis

Genomic Location: xfSc0000475:253...21499
NR annotation: XP_029206650.2, linear gramicidin synthase subunit D-like [Acropora millepora]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gfas1.m1.17705.m1

TTTGGAGGATTTCCTGTGGGATGCAGGGTCAATTTTGTATCGATAAAGGACTGTAGTGAAGCGTTCTCCTGGAAGTTTCAATATTCTTCCATTTCAAGTATGGATTTTGAAAGTGAAGGTTGCCTTCACGAGATTTTCGAACGTCATATGAAAGAGACTTCGCCGACGGCCACAGCTGTTGTGTCGGGCGATGGACGATCGCTTACATTCTCCGAGCTCGATGAACTCAGCGATGTTTTGGCTACAAATCTCAGGTATAAAGGTGTGAAGAAAGACAAGGCTGTGGGCTTATACCTTGAACGTTCCTTGGAATACCCTGTTGCTTATCTCGCGATTCTAAAGGCTGGCGGAGCGTACCTACCTCTGGAACTCTCCTACCCCGAAAGTCTACTGCATTCGATTTTAGAGGACGCAAAGCCTGTTGCAGTCATAACAAATGAACGTTCGAGAGAAAATCTCCCTCTTTCTGTGGATGCGATTGTTTTAAGTGATGGCTGGGAAGATCGGGTGGCTGAAGAGAATGAATCAGGACAGCATGTGGAAAAAGTCAAGAGTACGCTAGATGATTTAGCATACATTGTCTATTCTTCAGGTACCACTGGAAAACCAAAAGGGATATGTTGTCCACATCGTGGTGCTGTCTTTTCATACACTTGGCGATTTCACAATTTTCCTTTCCAGCCTGACGATTGTGTAGCTTGCAATGTGTTCTTTGTCTGGGAACTGCTTCGACCGCTTTTGAAAGGAATTCCTTTGTATATCATCCCTGACTCAGTCATTTATGATCCAACACTGCTGCTTAAATTTATGAAGAAACATGGCATAACGCGAGTGCTTTTCACTCCATCTCTACTCGAGACACTTTTAACATGTGAAGACGGTGACCTTGCTAAGTACTTGTCTTCCCTGAGAATAATCTGGTTATGTGGAGAAGTTGTCACGACAGCTCTCAGAGACAGATGCATGAGGATGTTGCCATGGATACGGCTCCTGAATCTGTACAGTGTCTCTGAGTGCCATGATGTTGCCACAGCTGATCTTACTAATATGCCATTTCAAGATGAACTCTCTGACTCAGATGACAACAAGCGTAAATTCTGTCCAGTTGGAAAGCTCTTGCCTGGGGTGTATGTTGCAATTATGGATGAAAACCTTCAACCATTGCCAGTGGGTCTTTCAGGAGAGATTTTTGTTGGAGGACCTGCTCTAGCTCAAGGCTACCTGAACAGACCAGAGCTAAATGCATACAGGTTTATAGAGCGTCCATCTGCAGTGCCCGAGTCTGCGGGGCCGAGACTGTACCGAACAGGAGACTGGGGTTATCTGCTCTCATCTGGTTTGCTGGAGATCTGCGGACGTTGCGACTCGATGGTGAAGATCAGGGGATATAGCATTGAAACACAGGCAGTTGAGGCTGCATTGTTGCAGCTGCCTATGGTTAATGGATGCAGTGTTGTTGCTCACGGAGAAGAAGGAGAAGACAAGTATCTTGCAGCTTACATTGTTCCAGAAGGAAACAAGGTTAGCACGAAAGACATTCGGGCAGCTCTGAAAACAAGGCTTCCCTTTTATATGATACCGTCACATTTGGTTCTTCTTGCAAGTATCCCTGTGACACCTGCCGGTAAGCTAGACAAGTCAAAACTGCCTCCCATTGGTTCAGCTGGAACAGAAAAGGAGGGTTTGCCGAGCACTCCTACAGAGCGCAGTCTTGCGAAGCTGTGGTGTGAAGTACTAAATGTTTCCAGCATTGATGTTCAAGAAGGGTTTTTTGACTTAGGAGGGCACTCGCTCCTGGCAACACACTTACTGCTTAAAGTTAACAACAACTTTGGTGTTAACCTGACCGTACAAGACTTGTTTGCCTGTCCAACAGTGTCACAAATGTCCAAAATGATTGACGAGTTGAAACAAAATAGCACACAGACTAGCAAAGATTTGTCCGAGGGCAAGCTTGATCTTTTAAGTGAAGTAAACTACCATTCAGCGGCCGAGGGATTTGTTAACATGGATATTATGTTGAGAGCATTTTGGCGTTCTGGAAACTTCAAGAACACTCGCCGTTGGATCAGTGGACGTGTCCTGCTAACTGGTGCAACTGGCTTTTTAGGAGTGTTTTTATTACGAGACCTAATTCGACTTACTAAGGTTCATATTTTCTGCATCGTGCGTGAACAGGCCGGTGGTCTCTTTGGAAAAGAAAGATTAAAACAAGCCTTGCAAAAGTTCAAAATCCTTCCAATGACAAGTGATCGCCAGCAAATGTCGGAAGAGGAGCGATACCTAGATTATGGCTTTGAGCATCGAGTAACTGTCATGAAAGGTGATGTATCATTAATGAAGCTTGGAGTGAGCGATGAGGAATATGTGCATCTGTCGTCAGAGATCGACTTAATAATTCACGCTGCTGCTGCAGTGAATATGGTGTACCCATATCAGGCTTTGCGAGGTGTTAACGTACGAGGAACACAGAACATATTGCTGTTTGCTTGTACCAGTAAAATCAAACCGTTGCATTACATCAGCACAGACGCTGTATTCCCTCACGGATTGTCAAACTGCTCTGAAGATGCCGACATGACAGAATATGCATCGCAACTAAATGACGGGTATTCTCAGTCCAAGTGGGTTGCAGAGCAGCTTGTGTTGAGAGCCAGGACCAAGGGTCTTCCTGTTGTCATATATAGATTAGGTAACCTTTCTGCTGACCGAGATCACGTACAGTGGAACCCGGTAGATTTTATTCTGATGATGATCAAAGGCATCACAGCAACACTTTCTGCTCCCAATGTTGATTGGCAAGTTGAAATGACTCCTGTGGACTTTGTGAGCGAGGTGATAGTCAAAATGACACAGGAAATGTCAGTATCAATGGGGAAGATATTTCACATCATCAATCCACAGCCTCTCGATGCAAAGTATGTTGTTCTTTAA

Transcript

gfas1.m1.17705.m1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A1U8QWA2	Glycine betaine reductase ATRR OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=ATRR PE=1 SV=1
Q70LM4	Linear gramicidin synthase subunit D OS=Brevibacillus parabrevis OX=54914 GN=lgrD PE=1 SV=1
B8N0E8	Nonribosomal peptide synthetase asaC OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=asaC PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002098 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00501 all species →	AMP-binding	AMP-binding enzyme	Family	Interproscan
PF13193 all species →	AMP-binding_C	AMP-binding enzyme C-terminal domain	Domain	Interproscan
PF00550 all species →	PP-binding	Phosphopantetheine attachment site	Domain	Interproscan
PF07993 all species →	NAD_binding_4	Male sterility protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR020845 all species →	Conserved_site	AMP-binding, conserved site	Interproscan
IPR009081 all species →	Domain	Phosphopantetheine binding ACP domain	Interproscan
IPR045851 all species →	Homologous_superfamily	AMP-binding enzyme, C-terminal domain superfamily	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR042099 all species →	Homologous_superfamily	ANL, N-terminal domain	Interproscan
IPR000873 all species →	Domain	AMP-dependent synthetase/ligase domain	Interproscan
IPR025110 all species →	Domain	AMP-binding enzyme, C-terminal domain	Interproscan
IPR010080 all species →	Domain	Thioester reductase-like domain	Interproscan
IPR013120 all species →	Domain	Fatty acyl-coenzyme A reductase, NAD-binding domain	Interproscan
IPR036736 all species →	Homologous_superfamily	ACP-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44845 all species →	CARRIER DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for gfas1.m1.17705.m1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gfas1.m1.17705.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.