Detailed information of gfas1.m1.17954.m1 in Galaxea fascicularis

Genomic Location: xfSc0000524:2057...10573
NR annotation: XP_029202240.2, carboxypeptidase Y-like [Acropora millepora]
Species Galaxea fascicularis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003947 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01847
all species →		VHLVHL beta domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036208
all species →		Homologous_superfamilyVHL superfamilyInterproscan
IPR037140
all species →		Homologous_superfamilyvon Hippel-Lindau disease tumour suppressor, beta domain superfamilyInterproscan
IPR024053
all species →		Domainvon Hippel-Lindau disease tumour suppressor, beta domainInterproscan

 PANTHER
No PANTHER signature was detected for gfas1.m1.17954.m1. This gene does have a gene model — the search simply returned no hit.
 Gene Ontology
No Gene Ontology signature was detected for gfas1.m1.17954.m1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for gfas1.m1.17954.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of gfas1.m1.17954.m1 across 22 RNA-seq samples of Galaxea fascicularis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

22Samples
20TPM > 0
4Conditions
164.0Max TPM
70.6Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
coral holosome · Control 7 7 99.58 164.04
coral holosome · 30ic treatment 6 6 67.64 132.42
coral holosome · Prometryn (herbicidess) treatment 5 3 40.32 73.17
coral holosome · Prometryn (herbicidess) and 30ic treatment 4 4 61.92 85.50

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (GFASC_TPM, StringTie quantification over 22 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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