Gene detail

Detailed information of gfas1.m1.1925.m1 in Galaxea fascicularis

Genomic Location: Sc0000063:272349...276218
NR annotation: CAH3195291.1, unnamed protein product [Porites evermanni]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P19536	Cytochrome c oxidase subunit 5B, mitochondrial OS=Mus musculus OX=10090 GN=Cox5b PE=1 SV=1
P12075	Cytochrome c oxidase subunit 5B, mitochondrial OS=Rattus norvegicus OX=10116 GN=Cox5b PE=1 SV=2
P10606	Cytochrome c oxidase subunit 5B, mitochondrial OS=Homo sapiens OX=9606 GN=COX5B PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008520 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01215 all species →	COX5B	Cytochrome c oxidase subunit Vb	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002124 all species →	Family	Cytochrome c oxidase, subunit Vb	Interproscan
IPR036972 all species →	Homologous_superfamily	Cytochrome c oxidase, subunit Vb superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10122 all species →	CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005740 all species →	Cellular Component	mitochondrial envelope	Interproscan
GO:0005751 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex IV	Interproscan
GO:0006123 all species →	Biological Process	mitochondrial electron transport, cytochrome c to oxygen	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02265	COX5B; cytochrome c oxidase subunit 5b	-	Non-alcoholic fatty liver disease	ko04932	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of gfas1.m1.1925.m1 across 22 RNA-seq samples of Galaxea fascicularis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

22Samples

21TPM > 0

4Conditions

825.6Max TPM

406.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
coral holosome · Control	7	6	339.52	771.01
coral holosome · 30ic treatment	6	6	362.72	403.53
coral holosome · Prometryn (herbicidess) treatment	5	5	517.44	825.56
coral holosome · Prometryn (herbicidess) and 30ic treatment	4	4	449.41	507.09

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27118488	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	771.01
SRR27118480	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	475.49
SRR27118486	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	333.65
SRR27118487	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	286.08
SRR27118491	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	263.31
SRR27118492	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	247.12
SRR27118485	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	0.00
SRR27118476	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	403.53
SRR27118466	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	398.83
SRR27118479	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	362.41
SRR27118478	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	348.37
SRR27118477	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	331.95
SRR27118468	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	331.21
SRR27118482	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	825.56
SRR27118483	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	746.60
SRR27118469	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	392.54
SRR27118484	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	312.29
SRR27118481	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	310.22
SRR27118475	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	507.09
SRR27118489	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	493.67
SRR27118490	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	412.36
SRR27118472	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	384.51

Source: CnidoSite RNA-seq expression matrices (GFASC_TPM, StringTie quantification over 22 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.