Gene detail

Detailed information of gfas1.m1.19331.m1 in Galaxea fascicularis

Genomic Location: xfSc0000907:29555...38722
NR annotation: CAH3156956.1, unnamed protein product [Porites lobata]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gfas1.m1.19331.m1

ATGGCTGCCATTATGAGTTTGGTTCCACAATTCATGAGCGACAAGAACAACAATTGCTTTAAAGATGAGGACTTTATGGCAAAGGAAATAACATTTTACCGACTGGATAACAACGTAAACGAATTCCAGGATTCATTCAGTGATGGTGTGAGGTACCTAAAGCAACTCCCCTGGGAACTTTTGAATGACTTAACGACGACCCTCAAAGATCCCTCGGACCTTGCTCGGAGAATCTTCGGCGACCCGGTTGTCAGTGACTTTCTAATTCGTTCATCTCGCCTAGCTGTGTTTTCCAAAGAATTTGCCAAATCGTTCAGAAGGGACCTGGACTCACTCGCTGTTATTAAACAGCTGAAGTTCTTCTACAACCAACCAACAGTTGCAATACTGCAGCACTTTTCCATGCTTGTAGCAAGGTCACCCTATGGAAACGATGCCGAAGCAGCACAGAAATGGGATGTAATCGTGCAGAAGTTCGCTGGAACCAAGTTGGGTGGGATTCCTGTGCGTCTTCTATTGAAGGAAATTGGCGGGCCAGTCTGCTATGAGAAGAATGCTGAGTATCTGGAAGGGGCAGATCCTCACGCTGTGTACCCTACATCCATTTATCGCATCTGCGAAGGGTATGTGCTGGCCAAACCTGACGCCTCCATGATCGAAAGCACCATGAGTTTGACGCTGACCACCACCATTAAAATCGTGAATGATGTGTTAAACCCCGCAAATAATGAGCTTAAAAACGTCTATCAGCCGTTGGGAAGATGCGTGGCCGTAATTGATGATAAAGTGGAGAAACTCTACGGCACAGCGCTTCAGGGCTACTTCGACAAGTACCAAATCGAACTGACCAAGTTGGTTTTTTCCGGCAATGAAACCAACAAGGACATTTCCACGGTTGAAAACATTCTGGTATCCCTGAAGAAAATTAGCGTCTCTAGAAACGAACCAGTACTCATCGTGGGCGGTGGTGTTATTACGGACCTCGCTGGTTTTGCCACGGCGCTGTACCACCGTAACACACCTTATGTAATGCTTTGCACAAGCATTGTGTCTGGAATAGACGCTGGACCTTCCCCACGAACCTGTTGTGACGGTTTTGGGTACAAGAACCTGTATGGTGCCTATCATCCCCCCGTTCTTACGCTGACCGACAGGTGTTTCTTCCGTACGCTACATCCTGGATGGCTTCGACACGGCATCGCTGAAATCGTTAAGATGGCTGTGGTTAAGGACAAGGAGCTCTTCAGCTTGCTGGAGCAGACATCTTTCGCTCTTGTGTGGACCAAATTTGGTACTGAGATGGATCAGTTCGGTGGTGATCAGGAAGCCTTTGGGGCCCTCTGCGACCTTGTAATCGGTAAAGCTCTTGACGGGTACGTGAAAGCAGAGTACGGCAACTTATGGGAAACTCACCAATGCCGTCCCCACGCCTATGGACATACGTGGAGCCCTGGGTACGAGCTTCCGGCCGGCCTGCTTCACGGCCACGCAGTAGCCACAGGGATGGGTTTTGGCGCTTATCTTTCCTATTGCGAAGAATGGATAACGGAGGAGGAACTGCGGCGTATCTTGAACCTGCTGAGTGACCTTGAGCTGTCTCTGTGGCATCCTATCATGGAGTACACACAGCAAGTGTACAACGCTCAGGTAAAAATGATTGAGAATCGTGGAGGGAACCTTGCAGCCCCTGTTCCTAAAGGCCTTGGGAAATGCGGCTATCTTAACCACATGCCGTATGAGCTCCTAGCCAAGAGGCTTCGAGAGTACCATTGCATCTGCCAAGGGTACCCCAGGAAGGGCTTGGGAGTGGAGGCGCATTGCAGGGACGTCGGATTGGAGGACCCATCAACTGAGGGCACCGTGAACCAGGAGCTCCCTGAGGTCATTAACGATTATGAAAGTGGTCACCATGGATACCAGATACAGGGAGGAATGGAGGACCTCCATGTGAATGGTGGTTGTGAGAACGGATTTCATGAAGACGACATGCCTATGTCTTACTCCGAATGGATAGACGCAGTACAGAAGAAGAGAACAAAGGGCTTGCCTTACCAAGTGGCTTTCGAGAAAGCTGGCGATACGCCTAATCCACCGTCCTTCGAGCACAACGAGCTCTGTCGTCCAGGTGTCGAAGACTACGCCGTCAAGATGACACAAGTTCCAAGCGAAGACATCCAGAAGATTGCCCTTGTTACCGAGGAAGAACAGATGTTCACACCCTGCATGATCGGGCAGCTGGAGGCACAGTTTTTAAAAATGATGGTGCAACTGTCCAACGCTCAAAGGGTCCTTGATGTTGGTACATTTACAGGAATGTCCGCCATGGCCTTCGCTGAGGGGTTACCAGCAAGTGGTGAGGTGGTCACACTTGAATTTGATCCAAAGATCGCCTCAGTTGCTGATCGCCTCTTCCGTGGCTCTGTTCAAGCTCACAAGTTGACTCTCAAGGTTGGAGACGCGGTAAACATCATGCGCGAACTCAAGACTGCGGGCGAGAAGTTCGACATTGTGTTCCTGGATGCTGCCAAAGATCAATACGTCTCGTACTATAAACTCGCCCTGGAGATGCTGACACCTTCAGGCTTCATCCTGGCGGACAACTCGTTGTGTGCGCTGCTGTATGATGAAGGGGATTCCAGAAGGCAGGCCTTGCACGACTTCAACCAGGTGGTTAAGAATGATGTAACAGTGGAACAACTGGTTATGCCGTTCAGAGAGGGCGTTTCTATCATCAGACCAAAATCATATTAA

Transcript

gfas1.m1.19331.m1

GTCACATGCTAACAATTTCTTTTCTTCTCGTTTCGGTAGTCTGCTAGCTTGAATTGCCGAAGACGCTTGATATTCCATTGTTTAAATGGCTGCCATTATGAGTTTGGTTCCACAATTCATGAGCGACAAGAACAACAATTGCTTTAAAGATGAGGACTTTATGGCAAAGGAAATAACATTTTACCGACTGGATAACAACGTAAACGAATTCCAGGATTCATTCAGTGATGGTGTGAGGTACCTAAAGCAACTCCCCTGGGAACTTTTGAATGACTTAACGACGACCCTCAAAGATCCCTCGGACCTTGCTCGGAGAATCTTCGGCGACCCGGTTGTCAGTGACTTTCTAATTCGTTCATCTCGCCTAGCTGTGTTTTCCAAAGAATTTGCCAAATCGTTCAGAAGGGACCTGGACTCACTCGCTGTTATTAAACAGCTGAAGTTCTTCTACAACCAACCAACAGTTGCAATACTGCAGCACTTTTCCATGCTTGTAGCAAGGTCACCCTATGGAAACGATGCCGAAGCAGCACAGAAATGGGATGTAATCGTGCAGAAGTTCGCTGGAACCAAGTTGGGTGGGATTCCTGTGCGTCTTCTATTGAAGGAAATTGGCGGGCCAGTCTGCTATGAGAAGAATGCTGAGTATCTGGAAGGGGCAGATCCTCACGCTGTGTACCCTACATCCATTTATCGCATCTGCGAAGGGTATGTGCTGGCCAAACCTGACGCCTCCATGATCGAAAGCACCATGAGTTTGACGCTGACCACCACCATTAAAATCGTGAATGATGTGTTAAACCCCGCAAATAATGAGCTTAAAAACGTCTATCAGCCGTTGGGAAGATGCGTGGCCGTAATTGATGATAAAGTGGAGAAACTCTACGGCACAGCGCTTCAGGGCTACTTCGACAAGTACCAAATCGAACTGACCAAGTTGGTTTTTTCCGGCAATGAAACCAACAAGGACATTTCCACGGTTGAAAACATTCTGGTATCCCTGAAGAAAATTAGCGTCTCTAGAAACGAACCAGTACTCATCGTGGGCGGTGGTGTTATTACGGACCTCGCTGGTTTTGCCACGGCGCTGTACCACCGTAACACACCTTATGTAATGCTTTGCACAAGCATTGTGTCTGGAATAGACGCTGGACCTTCCCCACGAACCTGTTGTGACGGTTTTGGGTACAAGAACCTGTATGGTGCCTATCATCCCCCCGTTCTTACGCTGACCGACAGGTGTTTCTTCCGTACGCTACATCCTGGATGGCTTCGACACGGCATCGCTGAAATCGTTAAGATGGCTGTGGTTAAGGACAAGGAGCTCTTCAGCTTGCTGGAGCAGACATCTTTCGCTCTTGTGTGGACCAAATTTGGTACTGAGATGGATCAGTTCGGTGGTGATCAGGAAGCCTTTGGGGCCCTCTGCGACCTTGTAATCGGTAAAGCTCTTGACGGGTACGTGAAAGCAGAGTACGGCAACTTATGGGAAACTCACCAATGCCGTCCCCACGCCTATGGACATACGTGGAGCCCTGGGTACGAGCTTCCGGCCGGCCTGCTTCACGGCCACGCAGTAGCCACAGGGATGGGTTTTGGCGCTTATCTTTCCTATTGCGAAGAATGGATAACGGAGGAGGAACTGCGGCGTATCTTGAACCTGCTGAGTGACCTTGAGCTGTCTCTGTGGCATCCTATCATGGAGTACACACAGCAAGTGTACAACGCTCAGGTAAAAATGATTGAGAATCGTGGAGGGAACCTTGCAGCCCCTGTTCCTAAAGGCCTTGGGAAATGCGGCTATCTTAACCACATGCCGTATGAGCTCCTAGCCAAGAGGCTTCGAGAGTACCATTGCATCTGCCAAGGGTACCCCAGGAAGGGCTTGGGAGTGGAGGCGCATTGCAGGGACGTCGGATTGGAGGACCCATCAACTGAGGGCACCGTGAACCAGGAGCTCCCTGAGGTCATTAACGATTATGAAAGTGGTCACCATGGATACCAGATACAGGGAGGAATGGAGGACCTCCATGTGAATGGTGGTTGTGAGAACGGATTTCATGAAGACGACATGCCTATGTCTTACTCCGAATGGATAGACGCAGTACAGAAGAAGAGAACAAAGGGCTTGCCTTACCAAGTGGCTTTCGAGAAAGCTGGCGATACGCCTAATCCACCGTCCTTCGAGCACAACGAGCTCTGTCGTCCAGGTGTCGAAGACTACGCCGTCAAGATGACACAAGTTCCAAGCGAAGACATCCAGAAGATTGCCCTTGTTACCGAGGAAGAACAGATGTTCACACCCTGCATGATCGGGCAGCTGGAGGCACAGTTTTTAAAAATGATGGTGCAACTGTCCAACGCTCAAAGGGTCCTTGATGTTGGTACATTTACAGGAATGTCCGCCATGGCCTTCGCTGAGGGGTTACCAGCAAGTGGTGAGGTGGTCACACTTGAATTTGATCCAAAGATCGCCTCAGTTGCTGATCGCCTCTTCCGTGGCTCTGTTCAAGCTCACAAGTTGACTCTCAAGGTTGGAGACGCGGTAAACATCATGCGCGAACTCAAGACTGCGGGCGAGAAGTTCGACATTGTGTTCCTGGATGCTGCCAAAGATCAATACGTCTCGTACTATAAACTCGCCCTGGAGATGCTGACACCTTCAGGCTTCATCCTGGCGGACAACTCGTTGTGTGCGCTGCTGTATGATGAAGGGGATTCCAGAAGGCAGGCCTTGCACGACTTCAACCAGGTGGTTAAGAATGATGTAACAGTGGAACAACTGGTTATGCCGTTCAGAGAGGGCGTTTCTATCATCAGACCAAAATCATATTAAGGGGGAACATTTGTTTAAAGGATCAGTTGTAGTTTTTTTCTTTTATTATTGAACTGATCAGTTTAGTATAATCAGTTTGGAGCAGATGGCCCAAGGCAAATGTAAAAGTTTCGACAATACTCATAACGCAGTGTGAGGTTCTCCTAAACACACACAAGCGCGTTGTGAAATTGCTGAAGCCAACGTGGATTATAACAATAAAATTATATATACTACAATTTTTGCAGTGATATATATCGGTACCTCAAAACCGCGAGTGGGAAATGTTTCAGTTGAGTGTCTGTTAGCGCCACTTCATCCTTTAAACCCCAAGATCAAAATTTAAATCCTCATTTGTTGCCTCTACACATTTCCTATAGGAGTAGTGGGGAGAAATTGTTAAAAGATCCAGCACTGATTAATCTTGTGTGATCCTGTCCTTAATTCTCTTGACCACTCTCTTTCATGACGTGTTGATATTACAAGGAGAAATTTAATGCCGATCACTCTTTGTTTAATGGGTTAAAGCAATAAAGCCTGGCAAAGTAGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B2J6X9	Demethyl-4-deoxygadusol synthase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=Npun_R5600 PE=1 SV=1
Q3M6C3	Demethyl-4-deoxygadusol synthase OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=Ava_3858 PE=1 SV=1
A8D7K2	2-epi-5-epi-valiolone synthase OS=Streptomyces albus (strain ATCC 21838 / DSM 41398 / FERM P-419 / JCM 4703 / NBRC 107858) OX=1081613 GN=salQ PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004678 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01596 all species →	Methyltransf_3	O-methyltransferase	Domain	Interproscan
PF01761 all species →	DHQ_synthase	3-dehydroquinate synthase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR050071 all species →	Family	Dehydroquinate Synthase	Interproscan
IPR002935 all species →	Family	Class I-like SAM-dependent O-methyltransferase	Interproscan
IPR030960 all species →	Domain	3-dehydroquinate synthase domain	Interproscan
IPR035872 all species →	Family	2-epi-5-epi-valiolone synthase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43622 all species →	3-DEHYDROQUINATE SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003856 all species →	Molecular Function	3-dehydroquinate synthase activity	Interproscan
GO:0008171 all species →	Molecular Function	O-methyltransferase activity	Interproscan
GO:0017000 all species →	Biological Process	antibiotic biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24265	PANK4; bifunctional damage-control phosphatase, subfamily II, fusion protein	-	Cofactor metabolism	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of gfas1.m1.19331.m1 across 22 RNA-seq samples of Galaxea fascicularis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

22Samples

18TPM > 0

4Conditions

61.2Max TPM

15.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
coral holosome · Control	7	6	19.44	41.51
coral holosome · 30ic treatment	6	6	20.76	61.19
coral holosome · Prometryn (herbicidess) treatment	5	3	7.86	18.45
coral holosome · Prometryn (herbicidess) and 30ic treatment	4	3	11.11	18.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27118485	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	41.51
SRR27118492	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	36.63
SRR27118491	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	18.89
SRR27118486	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	14.53
SRR27118487	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	13.07
SRR27118480	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	11.46
SRR27118488	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	0.00
SRR27118468	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	61.19
SRR27118477	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	16.93
SRR27118478	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	13.42
SRR27118476	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	13.26
SRR27118479	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	10.89
SRR27118466	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	8.83
SRR27118482	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	18.45
SRR27118481	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	14.85
SRR27118469	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	5.99
SRR27118483	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	0.00
SRR27118484	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	0.00
SRR27118490	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	18.17
SRR27118475	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	13.61
SRR27118472	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	12.68
SRR27118489	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	0.00

Source: CnidoSite RNA-seq expression matrices (GFASC_TPM, StringTie quantification over 22 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.