Gene detail

Detailed information of gfas1.m1.2012.m1 in Galaxea fascicularis

Genomic Location: Sc0000067:197871...216394
NR annotation: XP_022785203.1, protein phosphatase 1 regulatory subunit 21-like [Stylophora pistillata]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gfas1.m1.2012.m1

ATGAGTGCAGACTCTCAAACTCTGCAGGCAAAGTACCAGAAATTGGCTGCAGAATTTGCAAAGCAAAGAGCACAGAACACAGTCTTGAAGAAAGCCGTAATTGAAGAACAAGAAAAAACAAAGACACTTCAGGAAACTGTGCGACAGAAGGATCAGTCAATCAGGAAATATGAACAGGAAATTGACAGTCTACAATTTAGAAATGACCAGTTGTCAAAGAGAGTGGCTGTCTTACAGGAAGAGCTTGACGAGTATGATGGAAAGAACAGGAGGGGAAGGACCAGAATTGATGGGATGACAAGGCCAGATGATAATGATGTGAAAGATCAAGAACTTCAGATAAAAATCCAAGAAAATGAAAGGTTACAAAGAGAGTTATATGAATCAACCCAAGAACACAAGGGAACAATACTTAGCCTTCAGGAGAAATTAGAGACATTTGAAAGAAATTCCACGGATAATCAAAAGGTGTTGGATGAAGCTAACGAAAAGCACAGAATGGTGGTCGACAAACTTCACGAGGAAAGAGCAATGCTTGAGGCAAAATTGCAAAAAACAGAAGAAGAGTTAAAAGTAGCAAGTTTCAAAGCAGAAAAAAGCCACCAACAACTCAAGCTCTTACACAAGGAAATGACATCAAGATATGATGATGTCTCCAAGGTTGTGACAGAAAAGCTTCCTTTCAATGACACAAGCATCAGAGAATTGAACAGGCTTAATGTACCCACTCATGACCGAAGACATCAAGTTAAAGCAAAAGATCTCATCTGCCAAGCAGTTGAATTGGTTCATGAGCTTGTATCAGGGATGTCCAACTTTCATACCTACACAGAACAACGACTAAAGGCATTCTTTGTGGAATCCACTCAACAGCAGATTAGCCCTGTAACACAGAAGTTTTGTGACTACCTTCATGAGAATGCCGCTTTGCTTAGAGCTGTTGATCAAGCATTTAGTTCCTTCTATAACAGCATCAAGACAGATTCTTTGATATCAATGGAAACTATACCTGGTTTCCATGATTTTTCAGAAGCATTCCATAGATATAACAACTATTTGAAGAAGCTTGTGCCTTATTTTGTATTGAGTACCAGTGAGGAATGTAAAGCTTCAACTTGTTCCAACACCCTAGAGGCCTACAACAAGGCTCTTCTTCACTCTCTTACCAAACTGATCACAATTTTTAATAAGATAGACTCTCACATCGCAGTCCTGGCCTCAGCAAGTTCAGGATGTGGAGAGATCTTACCAGCAAATTACAACACCTCTTTTACGCTTCTTAATTCATCTGCACAGGAACTCCATGAATGTGTTAAAGTGTTATCAACTCATTTCCAGTCCAAAGTAACCTTAGAGCACCAGCTACCTACAGCTACTCAGACTTTGAAAAGCACAGATGAATGCATTGTGTCCTCCTTAGTTTCCCTGGTGACAGTGACTTCTAAGATTGGAAAGTTCATGAGCAATAACTTGGATTTCTTCTCAACAAAGTCTAGCATCAGAACAAGAGGTCTTACAACTTCAGCAAACAATGAGATGACGTCATCGCCAGCAGTTATGGAGTTCAGACACCATGCAGCTGATTACATTACAAAGTTAATGAGGCCCTGCCCAGAATCTGTACCATACAAATTAGCTCTGTATAATCACAAGGTTCTGGTTAGCTCAACAGAAAGCAAGGATTCATTAGAACAGCAGATCGCTGCGACTTATGAGAAAGTATCTAAACTTGAACAAGCCAAGGAACACTGGATGCTGGAGTCTCAACTGTTACAAGTGAAATACGAAAAAGAAGTCAAGAAAGTGCAAACCCTGCAACAAGAGCTAAACAAACTCCTGGAAGCAAGAGGCGCTAACTTTACAGATGGAATCGCGTCTCTCTCAGACGAAACTGGTTCTACGTCATCGCAGTCGTCCCTGACGTCACACAGCTATGAAGCTCCAGCTCCGCCGTCTGATCTGGGGTCAATTATGTCACTTAAACAAGATGAGGATGGAGACGATCTAGGACGAGAAGCTTTGATTAAAGCTCATTTTACCCAAAGAATAGCTGAACTAACTTCACAGGTTCAATTTACCGAAAGCAGGGCGGCTTCCATCAACGCAGAGTGTCGCGCTTTGTATCGGCGAATGAAACAAACTGAGAAGACGAAGCAAGAACTGGCGAAAAGCCTTAAGACTGCCAGCGCCAAAGTCAGTCAACTCGAAGACGAGGTGGAGACGATCAAACGAAGCTACGAAACGCAACTGTCAATGATGAGTGATCATTTGTGCGGAATGAACGAGAAGCTGACGTCACAGCAGGATGAAATCGAGGCTCTGAAGAGTGGTAAGACCAAGAAGGGAAAGCAGCGGTGA

Transcript

gfas1.m1.2012.m1

TGATCCCACGAGACCTTGATGTTTTAAGTTGCGGAAGTCACGTGTCATTGAGAAGGAAGACAAAATGGCGGCTTGCAATGCCAAATGACATCTGAAATTCGAAGGTTTCTGGACTTTTTCTTGCTCTAATGTGGATCTGTTTCAGTACAAGTCACCAAGATGAGTGCAGACTCTCAAACTCTGCAGGCAAAGTACCAGAAATTGGCTGCAGAATTTGCAAAGCAAAGAGCACAGAACACAGTCTTGAAGAAAGCCGTAATTGAAGAACAAGAAAAAACAAAGACACTTCAGGAAACTGTGCGACAGAAGGATCAGTCAATCAGGAAATATGAACAGGAAATTGACAGTCTACAATTTAGAAATGACCAGTTGTCAAAGAGAGTGGCTGTCTTACAGGAAGAGCTTGACGAGTATGATGGAAAGAACAGGAGGGGAAGGACCAGAATTGATGGGATGACAAGGCCAGATGATAATGATGTGAAAGATCAAGAACTTCAGATAAAAATCCAAGAAAATGAAAGGTTACAAAGAGAGTTATATGAATCAACCCAAGAACACAAGGGAACAATACTTAGCCTTCAGGAGAAATTAGAGACATTTGAAAGAAATTCCACGGATAATCAAAAGGTGTTGGATGAAGCTAACGAAAAGCACAGAATGGTGGTCGACAAACTTCACGAGGAAAGAGCAATGCTTGAGGCAAAATTGCAAAAAACAGAAGAAGAGTTAAAAGTAGCAAGTTTCAAAGCAGAAAAAAGCCACCAACAACTCAAGCTCTTACACAAGGAAATGACATCAAGATATGATGATGTCTCCAAGGTTGTGACAGAAAAGCTTCCTTTCAATGACACAAGCATCAGAGAATTGAACAGGCTTAATGTACCCACTCATGACCGAAGACATCAAGTTAAAGCAAAAGATCTCATCTGCCAAGCAGTTGAATTGGTTCATGAGCTTGTATCAGGGATGTCCAACTTTCATACCTACACAGAACAACGACTAAAGGCATTCTTTGTGGAATCCACTCAACAGCAGATTAGCCCTGTAACACAGAAGTTTTGTGACTACCTTCATGAGAATGCCGCTTTGCTTAGAGCTGTTGATCAAGCATTTAGTTCCTTCTATAACAGCATCAAGACAGATTCTTTGATATCAATGGAAACTATACCTGGTTTCCATGATTTTTCAGAAGCATTCCATAGATATAACAACTATTTGAAGAAGCTTGTGCCTTATTTTGTATTGAGTACCAGTGAGGAATGTAAAGCTTCAACTTGTTCCAACACCCTAGAGGCCTACAACAAGGCTCTTCTTCACTCTCTTACCAAACTGATCACAATTTTTAATAAGATAGACTCTCACATCGCAGTCCTGGCCTCAGCAAGTTCAGGATGTGGAGAGATCTTACCAGCAAATTACAACACCTCTTTTACGCTTCTTAATTCATCTGCACAGGAACTCCATGAATGTGTTAAAGTGTTATCAACTCATTTCCAGTCCAAAGTAACCTTAGAGCACCAGCTACCTACAGCTACTCAGACTTTGAAAAGCACAGATGAATGCATTGTGTCCTCCTTAGTTTCCCTGGTGACAGTGACTTCTAAGATTGGAAAGTTCATGAGCAATAACTTGGATTTCTTCTCAACAAAGTCTAGCATCAGAACAAGAGGTCTTACAACTTCAGCAAACAATGAGATGACGTCATCGCCAGCAGTTATGGAGTTCAGACACCATGCAGCTGATTACATTACAAAGTTAATGAGGCCCTGCCCAGAATCTGTACCATACAAATTAGCTCTGTATAATCACAAGGTTCTGGTTAGCTCAACAGAAAGCAAGGATTCATTAGAACAGCAGATCGCTGCGACTTATGAGAAAGTATCTAAACTTGAACAAGCCAAGGAACACTGGATGCTGGAGTCTCAACTGTTACAAGTGAAATACGAAAAAGAAGTCAAGAAAGTGCAAACCCTGCAACAAGAGCTAAACAAACTCCTGGAAGCAAGAGGCGCTAACTTTACAGATGGAATCGCGTCTCTCTCAGACGAAACTGGTTCTACGTCATCGCAGTCGTCCCTGACGTCACACAGCTATGAAGCTCCAGCTCCGCCGTCTGATCTGGGGTCAATTATGTCACTTAAACAAGATGAGGATGGAGACGATCTAGGACGAGAAGCTTTGATTAAAGCTCATTTTACCCAAAGAATAGCTGAACTAACTTCACAGGTTCAATTTACCGAAAGCAGGGCGGCTTCCATCAACGCAGAGTGTCGCGCTTTGTATCGGCGAATGAAACAAACTGAGAAGACGAAGCAAGAACTGGCGAAAAGCCTTAAGACTGCCAGCGCCAAAGTCAGTCAACTCGAAGACGAGGTGGAGACGATCAAACGAAGCTACGAAACGCAACTGTCAATGATGAGTGATCATTTGTGCGGAATGAACGAGAAGCTGACGTCACAGCAGGATGAAATCGAGGCTCTGAAGAGTGGTAAGACCAAGAAGGGAAAGCAGCGGTGACAAATATAAACAACAAGATTAGAAAATAGTATAAGACTAAGTATGACTTTGATTGTATCTCCGAGATCTTGTGTAATAAGGTTACACAGACCACAAACAGGGCCTCGGTAATTCATGGTTTCATTGGCGAGAAGGCAAAATAAACGCGCACAGACAAAGTGACCACGAGAGCTCCATGAGCGGGAACTTTGATCCGCGCGAGCATTTTGCGTCTCCATCGCCCAAAATTCCATGATAGAAACAGGAGTTTTAGACCATTGTTATATGTAAAACGATTTTAATCGAATTAGTTATGTTCGTCTTTTTTATATACATGTAATTTGGTAACTGACACGTACTTGGTTCAAGTATATCTCCTGCAAAAACTAAGCACCGCGTGAGATGTGGCACAAGGCTGGAAAATGACTCCTTGTATTTCGTCCAGAGATAATCTATGGTATGCCAAGAAACGTGAAAACGTTTGAAGTTCCTAAATTAAAGCAATTTGAGAAAAGTCTGGAAACCCTGTGACAGACCGTGCAGCTAAATAATGGCTTTAATGACGTCGGATTCTTTGGGAAAAGAATTGAACTCGCGTAAAGGTGCAAAAATTTTCGTAATTTCGTTTATGAGATAGCGAAGAATTAAATTCTCCATTTTAAATTCCTGGCGAATGTGCAAAGAACGCACAATTTCAGATTTCGAAATCTCGAATTTCACTCTATTAGGCGGTGTAATTTAGAATTTATTCACACTTTGAATTAAGCAAGTACTAAAGATATGTTTGGGCCTGATAGTAAAATTAGTTTTGGAAAACTTGATTGCGAAATAAACGGCTCTACACAATTTAATTTTCTCCAAGAAATGTAAACAGTCTCTTCCCGCTTTCCGATCATACCAAGAATAACCCAATCTATTATCAGTCAATAGCGTTGTCTGCAAACATTAAGCTCTATCTGAGTATTTCCTAGCGTCTACAGAGTTCCTATATAAAAGATTGAGACGTTTATCTCGTAGCTGAAATATACTCTTTTTTTATAAGAACGTCTAATTTTGGAGCGAGGCTCGACGTTCTTATTTTTGTTCCCTATTTGAGCCTGAAAACGTTCTTAAGGTGTTATTTGTTACATGGTATACACATGAAGTCGCGTCAACCAACTGGACCAACTGCTGGTAAAATGTAGCTTTACAAAAAGCATTAAGCATGGAGGTTCACAACACGACATAAAGTCACCAGATTTTGCAGTGAACTGACGCAGAAAAGTTCAGTATACTACTCATTTAAAAAATAAATGAGCAGACTAAAGATGCTCTTAACTGTCTCTCAGCCTGGGTTATCATGTTCGAATAATGTTCTTAAAATTTAAGTTCGACATTCTTATAAAAAGGTTCTTATAAAAAATAAAGAGTGTACGAGCTGACAACACGAGCAAAAAGACTGACATGTTACACAATCTTTCTCTCTACTAGTCACGTTTTATAAAAATATTAACCGCGTTCCCGAGTACTATTCGCCATTAAAATTAACAAACAAAACCCAGCAATAAAAACCAGAATTTGATCAGATGCAGTTTATTTGTTTTCTGTGGAATAACGAAAATGCTACCCACTGGTTAGTCATGAAAGTAATGAACTCTGGCGAGTGGGGAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6ZMI0	Protein phosphatase 1 regulatory subunit 21 OS=Homo sapiens OX=9606 GN=PPP1R21 PE=1 SV=1
Q5ZL12	Protein phosphatase 1 regulatory subunit 21 OS=Gallus gallus OX=9031 GN=PPP1R21 PE=2 SV=1
Q6IR70	Protein phosphatase 1 regulatory subunit 21 OS=Xenopus laevis OX=8355 GN=ppp1r21 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005706 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10205 all species →	KLRAQ	Predicted coiled-coil domain-containing protein	Coiled-coil	Interproscan
PF10212 all species →	PPP1R21_helical	Protein phosphatase 1 regulatory subunit 21, six-helix bundle	Domain	Interproscan
PF21636 all species →	PPP1R21_C	Protein phosphatase 1 regulatory subunit 21, C-terminal	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019343 all species →	Domain	Protein phosphatase 1 regulatory subunit 21, N-terminal	Interproscan
IPR019348 all species →	Domain	Protein phosphatase 1 regulatory subunit 21, six-helix bundle	Interproscan
IPR040024 all species →	Family	Protein phosphatase 1 regulatory subunit 21	Interproscan
IPR049372 all species →	Domain	Protein phosphatase 1 regulatory subunit 21, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21448 all species →	SMOOTH MUSCLE MYOSIN HEAVY CHAIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17562	PPP1R21, CCDC128, KLRAQ1; protein phosphatase 1 regulatory subunit 21	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of gfas1.m1.2012.m1 across 22 RNA-seq samples of Galaxea fascicularis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

22Samples

21TPM > 0

4Conditions

137.3Max TPM

73.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
coral holosome · Control	7	7	73.48	99.85
coral holosome · 30ic treatment	6	6	85.58	137.34
coral holosome · Prometryn (herbicidess) treatment	5	4	73.26	134.06
coral holosome · Prometryn (herbicidess) and 30ic treatment	4	4	57.47	75.61

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27118485	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	99.85
SRR27118487	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	85.25
SRR27118486	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	80.83
SRR27118480	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	70.75
SRR27118491	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	65.89
SRR27118488	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	63.96
SRR27118492	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	47.84
SRR27118477	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	137.34
SRR27118468	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	90.02
SRR27118476	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	84.80
SRR27118478	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	77.76
SRR27118479	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	76.35
SRR27118466	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	47.19
SRR27118483	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	134.06
SRR27118481	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	86.52
SRR27118484	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	85.83
SRR27118469	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	59.90
SRR27118482	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	0.00
SRR27118475	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	75.61
SRR27118472	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	63.66
SRR27118489	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	47.57
SRR27118490	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	43.04

Source: CnidoSite RNA-seq expression matrices (GFASC_TPM, StringTie quantification over 22 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.