Gene detail

Detailed information of gfas1.m1.20253.m1 in Galaxea fascicularis

Genomic Location: xfSc0001271:11672...20823
NR annotation: CAH3168491.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

gfas1.m1.20253.m1

TATGCATCCAGGAAAGAAGGTGGACATCACCAAACTGTAACCTCAGTTCATGATATGATCAGTTTTCTCAATGTTCTCTGTTACAAACTGTTGACTCACCTCCGTATCAAAAGCCGGATTGTACTCGTTGAAACCACTGTAGAGGTCATCTTCATCCTCACCAACGAGATGCACTGATTGCATCATTTTGTCTGGTTCCTGATGGTAGAAAAATCAATTTTTCACATCAACAGACACAAAAAATTCGGAATGTTTGTAGTTGCCATCAACAATATGGCCGCAACAAGACGTCACCAACATAGTAGTGCGCATGCGCAAGATTTCCCGCGCATATTTTCAAGATGGCGGCAGTTCGCCGTTGGTTGGAATCTCGCCATGTTTACCTACAAAATGAATGGGCAGAAGCCTGCATAAACTTTGTGAAGGAAGACAACGAGGAAAGGCAGTTGACGTCTCTCCAGCTGAACGATCTTGTGTATGAACAATGGCTTATGGCTGATATTCAAGAATCCAGTGCTCCTTGCTTGCCAGAAGGACTTGGTAACGTAGATGTCTGTAAACTGGAAGGATATTTCAACCTTCAGATTAACTCCGTCCTGAATGTTGGAGAGTCGGCATATTCTCAGATTCAAAAAATGAAAGGTCAGGACGATCCAGAAGAGCTGAACTGGAGGACAAATCCATCAGAACCAAAACTCAAGCCCAGTAGAATGTTACTTCTTGAACTAACTGACGGAACACAGACTGTTTTTGGAATGGAATACCATCTGATTCAATCCTTAAAAGTCACGATGTCTCCTGGAACTAAGATCCAAGTGATTGGCCCCACAACTTGCCAACTGGGAGCATTGCTACTGACACCCAGTAATGTGAAAGTCTTAGGTGGGAGTGTGCAGATGCTGGAAGAAAACTCTTCCTGGAATGTTCTACACCAGGCCATAGGGCAAGATCCACCTGAGAGACCTGGCATTATTAAAACAGAGGCTGTCCCCCATGAGGAGTCCAATGTGGACCAATGTAGCATTCAAAATAACACAGCCATCTACATTAATCAAAGACCTGTTGAAAAACCACAAGCAAACTTGGCAAAAATGGCCACTGCGGGTCTTTGTAGCAATAAAGCGAAGTTTCCTGAATATGGAGGACAATTTAAACAACATTGCTCAAGTGAGAGAACAATAGTTAAAGGGATTGTAACTACCAATGCCTGTAGAGATTTTCAAGCTGAAATATTGAACAATGAAGAACTTTTCGATGATGATGATGACTTAATTGCTGCTATGGCCGATGAAGACTATTTTGGAAATGAAGAAGATTTTGATATGGAACAGATTGATCAACTAGAGCAGGGAATGCAAGATAGAAGCAAAACTGCAGCAACTAAAAGAAAAACAACTTGTGAAACAGAAACAATTGAAATGGATAGCTTTGGGGTGTTATGTGGTGATTATGAAGGTGATGATGTTTTTGAGGATGATTTCATCACAAATGGACCCCCACCAGAAGATGAAGAAGGCATTGAAGTAAAACCCCTTTATCAGAGAATTTGTAGCAAAGACAGGTCACGAGCAATCCATCAATCAAAGAAAGCAAAAACATCAGCAACAACAACAACAATAAATACTACAGAATTTCATGATTCTTCTTGGAAGACAAGCTCTTCTGTATCAAATAATAGTAACATCCATATTCAAGGAGAATTGTTTGCAAATGCCACAAGACTAACTATTCCAAAGGTAGATTCCATGTTACAGATGAGTAATGGTTTGATTGAAACAGAATCCAGCTCCAAAGTTACCAGCCTGGATTGCAATGTGGCTCCATTTATGTACCTGTCAGACATTCTGAAACATCTCTCAGTCAGTCAAGAATACATCGTCAGAGTCAAGGCATACATTGCTACCATTGTGTCCCGTTCTAACCCATCATCACCAAACTGGAATGTAATAGTGAAATTGAATGATGGGACAGGTACTGTGGATGCTGACCTGAGTGAAAAGCGCGAAATACAGGAAGCCATGAAGACTCGTAACACAGCTGTGTGTCAGAGGTTACAGAAGAGAAGTGAGCTATTTCAAAGAAACCTTGCCTCGACATCTTGCTTGATGGATTTGCAGTTTTCCGTGGACATGCCAAGGCCACGTGTTCTTCACCTTAGCCAGACAACCTCTGCAGACGTTTCAGCAATGCTTCGTCGTGTCAGTGGACTGCTTTAGTACCAACAAACGAGGAAGGAGAAAATGTTGTTTAAGAGAAGACTCTAAACAGCTTTACCCAGA

Protein

Uniprot

Uniprot term	Description
A4IF98	RecQ-mediated genome instability protein 1 OS=Bos taurus OX=9913 GN=RMI1 PE=2 SV=1
Q9D4G9	RecQ-mediated genome instability protein 1 OS=Mus musculus OX=10090 GN=Rmi1 PE=2 SV=1
Q9H9A7	RecQ-mediated genome instability protein 1 OS=Homo sapiens OX=9606 GN=RMI1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08585	RMI1_N_C	RMI1, N-terminal OB-fold domain	Domain	Interproscan
PF16099	RMI1_C	Recq-mediated genome instability protein 1, C-terminal OB-fold	Family	Interproscan
PF21000	RMI1_N_N	RMI1, N-terminal helical domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013894	Domain	RecQ mediated genome instability protein 1, OB-fold domain	Interproscan
IPR032199	Domain	RecQ-mediated genome instability protein 1, C-terminal OB-fold domain	Interproscan
IPR042470	Homologous_superfamily	RecQ mediated genome instability protein, N-terminal OB-fold domain superfamily	Interproscan
IPR049363	Domain	RMI1, N-terminal domain	Interproscan
IPR044881	Homologous_superfamily	RecQ-mediated genome instability protein 1, N-terminal helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14790	RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0000712	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0016604	Cellular Component	nuclear body	Interproscan
GO:0031422	Cellular Component	RecQ family helicase-topoisomerase III complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10990	RMI1, BRAP75; RecQ-mediated genome instability protein 1	-	DNA repair and recombination proteins	ko03400	deepkoala