Gene detail

Detailed information of gfas1.m1.20358.m1 in Galaxea fascicularis

Genomic Location: xfSc0001317:6658...25943
NR annotation: XP_022783066.1, F-BAR domain only protein 2-like [Stylophora pistillata]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gfas1.m1.20358.m1

TCAGGTTTTCCCATCACATTTAAGAGAATAGAAAATAAGAAAAAGAAGAAGAATAAAAAGAAAGACAAGGCTGAAAATGGTCCAGTAGATTCACCATCAAGTGAAGGAGGGGATGCATCATCGTCATTTGAAGTAGATGAAGAAGGGTACAGGATAAGTCCCCCTGATTCAGAGAGCACTAAGTCAGGAGGGAACAGTTCTTCATCAGATTCTGATTCAGATGATGATGAACCTCGAAAATTGCAAGTCGTTATAAACCCTGTGGAAGCTGATAGAGTTCCTCAGACAGCTTCAGTGGATGAAATAAAGAAAATAACTGGATCTCTTAGTCTTTCCTCACCCTCATCAATGAGAAAACATCTTAGTTCGTCAGGTGAAGGGATGAGAAACAGATCAAAGTCTGGAGGAACATCTTCAACAATGAAACTCTCACGGTCTAGTGACGATTTGTTAGATATAGATTTCAGTCAAACCAGCTTTCCATCTCTAAGCAGTGAATCTACATCATCTGGATCGCAACGCAATTCCCTGCAACTGTCTCAGGACATTGTAACAAGCACTGCTGATGTAGAGCAAAGGTCACAGAGCTCTGTGGATCTAAGGTCTTCAGCTGCAGCATTGCCTTCATCTTCCAGTCTAGACTCCACTGAGAGTAAAGATCCAGAGTTCTTTGACATACCACCTCTGCTTCCTGTTAAGAAAGGAAGCTCAATGCAAGAGGAATCTTCAGATACTCCTCCTCCTTTGCCAGCTAAGAAAGGAACCAATGCCTCGACATCGGATAGTGATTTCACCCTAGGTGGAGTGCCAGAGACGACAGCTAGTGACACAGGAATCACATTCTCTGCAGCTCCAGCAGCAGCAAGTGACAGCAATAGTTCCTTACTTCTCCTCAAGCCACCTCCAGGATCAGAGTTTCCTCGTTCGGCATCTGTTAGTAGTGCTGTACCAAGGCCAAGACCGCAGCCCCGTTCTTCTGGGTCTTTATTGGTTGTTCCTGGTCAGAGTGGTAAACCACCATCAACAATGTCGTCATCATCATCAACAACATCCTATTCAGCTGAACTACTCAGCTGTTTCGCAGACTTTACACCTACAACGACGGAAACATCAGATTCACATTCTAATCAAAGTGAAAGCAGAACTACAGCCAGTAGTGCAGATAAATCAGCTGTTGTGAGTTACTTGGGATCAACAGCAAACACTGCAACCCAGTCACTCAGCAGAGCAACTACAACATCATCTATCGGAGGGTCACAAGAGAATACACCTGCCTTAGTGAGGTCAAAAACTGTTGGAGGACTCCCTACCATGTCAAGTGTGGTGCTTGCCAAAGGGGCAGCTGGTTCTGTCCTGAATAGAAGGGACGATGGTCTCCCAATTGCCGTGGCCTTCATTGAGTCTGTCAATGCATTTTTTCGAGGTAGTGATCAAAGCAAGTGTATGGTAAAGGTTACGGGTGACATTACAGTGTCATTTCCTGCCAGTGTTTTGCCACTTATTTATGATACAGAGAATGCTCCTATGCTTAGTTTCCTTGTACGTGGAACATCCTGCCTTGAGCAGATATTGCCAAACAAGGCTTTGATTAACAGCAAGGGACAGCTAAGTGGAGGGGATGGTGTAAGCTATGATTTTAATATGGCATCTTTGGCTGATCACCTCAAGAAACAATCTGAACAAGGATCAAGTACTTATTACAATATTGATATCATCAAATATGAGGTTAAGACAAATGGGTTCTCCACAACACCTCTGCAGCTGTGTAGTTATTGGAAATGCGAAGAGGAATCAACAGATCTCAGAGTGGATTATCGATACAATCCCACTTGTATGTCAACCCCCTGTACCATTAGCAACTTATCTGTGCTGGTGCCAATGAACGGAGGAGTTACCATAATGCAGTCAAAACCTTCAGCTACTTGGTCTGCAGAACACCAGAGAGCTTTCTGGAAGCTTCAGGAAGTGTCAAATTCATCTGAAACTCAAGGTTCTCTGAGGGCAAGATTTGATCTATCCCAAGGACCGAGCACCCCATCACGGATTGCTGTTCAATTCACATGTAACGGAGCAACCATTTCTAGACTAAATTTTGAGCTTAAAACTCAAGAATACAAACTCTCTCTTGTCAAGAAGAGGTTCACTACAGGGAAATACATTGTGGAGAGCTAGTGTGAGCTCATGCTGAAAGGACACAAAAACTAAATAAATATTTTAATGATTTACACATTCAAATTTAAATCAACTAGCTGAAGAAAAGTAGAGGCTTAAAATGTAAAATGTAAATGAATGACAGGAACTAAAAGAGAAATGATATTAAAAGGAATTATAGAGGATAAGGATTTCACACGTGATTGGCATTTCACAGTGTACTAGGTTATTTCTACCTCATCTTCCACATGTATAATATGCATTTTAAATATATTTTGTACTTAATTTTAAAAGTGCAAAAACACAATTTGTTTATTCAAGAGTAGGAGAAATTGTTGCCATAAGGATGGTACTGTTATTTTGTTTAGTGTTTTAAATTTCGCTGCTGTGTTTGATGCATTTCACAATAAATAAGGTTTCTGCTCTTCACTGCAGTGACAGATTGTTCGAAAATCTGTGCACTTTATTTTTTCTTACTCTTTTCTTTTCAAGTGGGTCATATGCATTGCTGTTAACAAAGAGTATTGAGGAAGAATGCCATGGGTGGTTGCCTCTTAACCCTGTTGCTCCCAAATGCACAAAAATGAACAGTAGATGTGTGGAATATCCAAACTGCATGAAGTCACAGAAAGTGCTACCTCTTACAGTCTTTCCCTTTATTGACTACCCTTGGTATTTCATCTGAAGGCTTTTACTTGCATTATGCTCCATATATGTCAAGTACTGTTTTGCAGAAAGACACCAAGTGAGCAGACCATAGTAAAGAGCTGTTCATTTTGACATCTTTTTTCCTGCAATGGATGTGACATGAATGAAAATGGTCAAGGTTGGCCTCAGTCTTGTTACATTCACAGACTTCTTTAAGGTTTTCTTATGTAGGAGACTTGTGACCTCAAAGTCCTTGCACAATACAAATTTAAGTCATGATGTAAGAATTTGTCAACACTAGTTTTATTTGGTATAGACTCTTAATTCACTTGCATCTGGCAAAATGTGGACAGTCATACTTCTGCCTGGCCATAATCTATTGTATTTGCCTCTTAAGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q502I9	F-BAR domain only protein 2 OS=Danio rerio OX=7955 GN=fcho2 PE=2 SV=1
Q0JRZ9	F-BAR domain only protein 2 OS=Homo sapiens OX=9606 GN=FCHO2 PE=1 SV=2
Q5R807	F-BAR domain only protein 2 OS=Pongo abelii OX=9601 GN=FCHO2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004427 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10291 all species →	muHD	Muniscin C-terminal mu homology domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036168 all species →	Homologous_superfamily	AP-2 complex subunit mu, C-terminal superfamily	Interproscan
IPR018808 all species →	Domain	Muniscin, C-terminal	Interproscan
IPR028565 all species →	Domain	Mu homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23065 all species →	PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005905 all species →	Cellular Component	clathrin-coated pit	Interproscan
GO:0030136 all species →	Cellular Component	clathrin-coated vesicle	Interproscan
GO:0048268 all species →	Biological Process	clathrin coat assembly	Interproscan
GO:0072583 all species →	Biological Process	clathrin-dependent endocytosis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gfas1.m1.20358.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.