Gene detail

Detailed information of gfas1.m1.20366.m1 in Galaxea fascicularis

Genomic Location: xfSc0001323:2089...14971
NR annotation: KAJ7378720.1, Hepatocyte nuclear factor 1-alpha [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

gfas1.m1.20366.m1

TCAAAATGAAGGTTTCCGCTACGAATTCGCGCTGGAAGCGATTAGTTTGCATAGACCATACACAGGCTATGTGACAGCACCATGGCTGAGGAGCTCACAGGGCTTCAACAGCAGCTACTTGGCGCGCTGGTGGAGAGCGGTCTTTCCAAAGATGTGCTGCTCAGAGCGTGCGATGCGCTTTATGCTAGACAGGCAGAGATCACAGAAAGTGCAGATAGCGCGGCGGCGAATAACGCGCAACATGAAGAAAAGCCCGAATTATGCAGAGATCTACAGCAGACCACACCAGGAAGAACTGATGCGCCCAGAATTGAAGAAGCACCTAAACGCATTGTCACACAGGAGACACGCATGGAAGCCGAACAACAAATGAACTTCCTTGACCATATGCTCAGGTATGATGTAAATTTGGTAACACACAATAAACGTATGTAGGTCATGAGATTTACTGCACTGCACTGCAGAATCTCGCAGGAAATCACCGAATCATTGTATTCATTGTTGGACTGCAACCGAGTACTGTAGTTATGTTTGACAGAAGAGTGCGTGAAAAGTGTTTTTTTTTTTCTAATACGTTACTTATGCTTTCATTTTATATTAAACCGATCTTAGTTGTACCCTCACCTCGCCCGCCTTTCTTCAACTGATACGTGAGTCCTGCAGTGATTTCACGCTTCGTTTCTTTGTTCTGGTTGCACCTACTTTGATCGATACATTGTAGTTCACTTAAACACACGAAGCGACGAAACAATTCGTTTGCAGTCGAATGTTCGTTTCGGGTCAGTTGGTTTAATTGTGGTATCTCCTTGTCGCGAACTCACATTTTTGAGATTTGGAGTCACGCCGAAGAACCGATCCATCTTGGCTTCTGGGCTTCGCTGACACCTCTCCTCGATGAGTGTTATGAATTATCGATTGGGAGTGAAGTCGAAGTCGGGAAATCGCTCTCTTATTCGGACCATTTCAAAAGAGATCTCCTTTGAATCGTATCAAGCGAACGTGTAACAAGGTCGCTTTGCATTATTTATGAAATGTACTCCCAAGTTATATTGCGTTTGTGAATATAAAATCCACCGCGTTAATCATTTGCTTGAGTCCATCTATAAAAGAAAGGCCATTAAATATTAACTTTGAAAACGCAAAGGAAGTGATATTTTGGGTCATGAATATTCTAGTGATCAGTTGAATAGTGCTGAAGTAAGATATAGTATCGCCTTTGTATCCAGTTCGAAGCGCAGTCTTTTTTACGCGTCGTTGTGTAGTTAGGTTTCCTCGTCGTTGACAGACAAAAGTGGAGACATTAATGGACGTTTTTTATGACTCGTTTCCCCAAGTTGAACGCAAACTAGTGGTGAAAAGTTTCTTCTTTTATATTGCCGTTGATAGTGTTAGTTCGTGATCCAGAAAACGTTTTCCTCGGTTTTGTGCGATCCATAAAATATGTGCAAACGATGGACTTTCACACCCTTTGAAACATAATATCACTTGGCCATGAGAGAATTCCTTGGTCGTCGTAATCGATCGACAGTGATCTTCGAAGCTAACGCACGTTTTTCATGGACTATTTAGAAATGGATCCATGGCAAGCAGCAAAGATAATCAAACTGTACATGCAGCAGCACAACATTCCTCAGCGAGAGGTGGTGGAATCCACAGGATTGAATCAGAGCCACCTATCACAGCATCTCAACAAGGGTACACCAATGAAAACTAACAAAAGAGCTGCTCTGTACACCTGGTTTGAAAATAAGAGGAAAGAAGTCATAGAACAATACAATTCACCTGGAAAGCGGCAATTGTCTGAAATAGAATGCAGTGGAGGAAGTTCATCCAAGAAGAGCAGAAGAAACCGCTTCAAATGGGGACCAGCATCCACAGGCATCCTTTACCAGTCATATGAGGATCAAAAAAATCCTTCAAAAGAGGAAAGGGAAGCATTGGTTGAAGCTTGCAACCGGGCAGAGTGTAACCAGAGAGGTGTTCCCTATGACAATGTAGAAGGACTGGGTCCAAACCTAGTGACTGAGAGCCGTGTGTACAACTGGTTTGCCAACAGACGTAAGGAGGAAACATTCAGACTCAAGCTGGCAATTGATGCTGCAAACTATCCTGAGACTCCCATTACTGCAGCTCAAGGACCAGTGACTGTTACTCGGCCATTAGCTTCTCCAACTGTACATACAGTAATGTCACCAGTGATCCCACACCCCACGCCAACTACTGCAGTGCCTTCCATGGTGAAACCTTCTTTATCACAACCAGGGCCAGTAGATCCAGTTACAACACAACAACTTCAACAACCACTGCTTGGTGCAAGCCATATTGGCCATGGCCAGCAGACAGCTGGAGATCATTCAAGTCAACTTCAGGGGGTGTCTGCTGTGATGGGTAACTTTGTTCCTGCAGTGCCTCCTCCGCAGATGCCTCTGAATATAGCCATGATGCCTCCACCAGGAGTGGCCGCTCCTACTTGCCAAGTTGCCGTACAACCACAAATGATGCCTACTTCCAGCATGGCTCATCACCAACATACAGTGGTACCAGGTATTGGCCAACTGCCAGTTCTTGTATCAGTGCAACCAGGGATTGATGGAATACCCCATGGCATGCCACAACTCGCAGAGAATGTGTCACAGATTGCTGGAGCACCCCAACTAGTTCAAATGCATCCTGTTCCCATGACAACACTTCCTATGCCACCACCTCTACAGCCAATCACATGTAGTGATATACCATTACCTCCATCGCTTCAACCAATCTCTGTGATGTCACCCATGGTGCAGCTACCACAACAGCCTCCAGTTCCCGTCAGCATTCCACCAAACAGTGGAAATTTGAGTGGGAACATGAATCAACCACAGTCACCTATTTATGAGGTGAAACTTAAGGCTGCAGTAATTGAGAAGACAGATGTTGTGATTAGCACTCCTCCCATTAAAACCAAGGAAGAAGTCAAATGTGATGGACTTAAAGTGGAAAATGGTGATGATGACACAATAATAGCTGAGAATGTAACTATCACAACTGAAAGAGAAGAGCAGAGCTGTGAAGGCTCAAAACCAAGTGATGATGTGAAAAAGGAAAACAGATGTTCTAAACCTATTCAAGCACCAACTGCAGAGGATTCTCCTTATTGTCAAAAACTCGAATCCAGCTCACTCGCAAGCGCAAAAGCGGATAGATCCAAAGCCCAGTACGTATTTCATTCTTCAGATGAAGACAGCTGTGTAGCCTGTCAACTGAATACTAGTCAAGTTAAGGGAGACATGACAGTCAACATTGAAGGTTCCCCAGTTCATGCTAGCATTGATTCAAGTGCAACAACCAACACCATTGACTATACAACGCATGAAAGCATCAACGCCATTACGAATTCTTCTTTGAAGTCTACAAAT

Protein

Uniprot

Gene family

Uniprot term	Description
Q90867	Hepatocyte nuclear factor 1-alpha OS=Gallus gallus OX=9031 GN=HNF1A PE=2 SV=1
P22361	Hepatocyte nuclear factor 1-alpha OS=Mus musculus OX=10090 GN=Hnf1a PE=1 SV=2
P15257	Hepatocyte nuclear factor 1-alpha OS=Rattus norvegicus OX=10116 GN=Hnf1a PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04814	HNF-1_N	Hepatocyte nuclear factor 1 (HNF-1), N terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010982	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR039066	Family	Hepatocyte nuclear factor 1	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR006899	Domain	Hepatocyte nuclear factor 1, N-terminal	Interproscan
IPR044869	Domain	HNF-1, POU-specific (POUs) atypical domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11568	HEPATOCYTE NUCLEAR FACTOR 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001889	Biological Process	liver development	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030073	Biological Process	insulin secretion	Interproscan
GO:0031016	Biological Process	pancreas development	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08036	TCF1, HNF1A; transcription factor 1, hepatocyte nuclear factor 1-alpha	-	Transcription factors	ko03000	deepkoala