Gene detail

Detailed information of gfas1.m1.20522.m1 in Galaxea fascicularis

Genomic Location: xfSc0001397:7937...23923
NR annotation: CAH3030761.1, unnamed protein product, partial [Porites evermanni]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gfas1.m1.20522.m1

ATCATCGATGACAAAAGAAGTTTCGGGACAGATTAGACGGGCTCATTTTCCCTTTATCGCCTCTTTAACATTTTGCTGTTTGGCCTGTGTATGATTGCTTTCCAGGACTTGGAAAAGAACTGTTCCAATGAATGATTTCAGACACATTTAGGAGGACCATACAAGGCGGACTATGCAACGAACGTCTGAAGTTCAGGGCCACGAGTTGGATCTCTCTTGGCATGTGGAATACATTGCTGTGGTTGCGATCGACTTTGGTACAACCTTCAGTGGGTTTGCTTTTGCCTTCAACCACAAAGATGGGGAAAAGGGCATCCATATGAACAAAGAATGGGGTACCGATCAAGGCTACTCCACCCTCAAGACACCGACTTGCCTGTTGCTTAATCCAGACAAAACCTTTAATTCTTTCGGATTTGAGGCGCAGGATAACTATGCCCAGCTAGAGGACCATGAGGCCCAAGAATATTACTACTTTGAGAAATTTAAAATGATCCTGCACAGCAATGAGAACTTAAACAGAGACACCAGCTTAGAGGCTTACAATGGAAAACATGTAAAAGCCTTAGAAGTCTTTACGCACTCCATCCATTACATCCACACAAGAGCTCTTGAAGTCATCCGTGAGAGAACTGGTGACGAAAAGTTTAATTCAAACGACATCCAGTGGGTCATAACTGTGCCGGCAATCTGGAAACCAGCTGCAAAACAGTTTATGAGGGAAGCAGCATACCAGGCTGGTTTAGCTTCTCCTTCTAACCCAGAGCAAGTGCTTATCGCTTTGGAACCTGAAGCTGCTTCGGTTTACTGCAGGCGACGAAAAATTAGGGAGTTTGTTGCCGAAAGCGGGAGTGATGACGCCTCAGTCGGGGACACTCTGGCTCTTCCTGACACACAATATGTTGTCATAGATATTGGGGGCGGGACACTTGATGTGACTGTACATGAAATCCAGGACAATGGCGCGATAAAGGAGATTCATAAGGCTACGGGAGGTGCAGCTGGAGGGCAGAATGTCAACAAAATGTTCAAAGGTCTTCTTGAAGAGATATTTACCCAAAACGTCATCGAGAAGTATGTCAGGGAACATCCAGTGGACTGGCTATATTTGATGAATGACTTTGAGGTGAAGAAACGCGGAAATCGAGCCTGTGAGGGCGGAGTGACAAGGATAAGGTTGCCTAACAGTTTTGTGAACAAATTCTCAGGTGATAAGGGCTGGGATATCAACGCAATGATCCAAGAACGTTACAGTCTAGACGAAATTAAGGTCCAGCGAAAGGAATACCTCTGTCTTGGTGCGAAAGTAGTGAGGGAACTTTTCCATCCCGTCCTGGATGATATCATAAGGCATCTTTCAAATCTATTTATAAAGCAGGAATTGTCTGGAGTGAAATATGTATTCCTTGTTGGAGGTTTTGCCGACTCGTCTCTTCTTCAGGAAAGAATCAAGAATCACTTTGGCCACAGCTATCGCATCATGGTGCCTCAATACGCCTCCCTTGCAGTTGTCCAGGGCGCGGTCATGTTTGGACAAAATCCAGACGTATTTGAGTCCAGAGTTATGCCTGCTTCTTACGGCATCCGTGTGCACAAGATGTTTCTTGATGGCCTTCACCCCGAATGTAAGAAGATAACCATAAACGGCATACCACGTTGTAAAGATGTCTTCTTCAAGTTTGTTAAGGTCAACGAAGTTGTAAAAGTCGGCGAAATTCGGCGATTCCCTGGCTTTGCACCTCTCACTGCAGCACAAAAGCAAGTGAAGATCGATTTTTACCAATCGGAACTCGTAGATGTGGAATATGTTACAGATCTTGGTGTGGAGAAAGCTCCCGGTCAAGGGTTAGTGCTTGAGACACCAGACGCCTGGAAGACGCGGGACATTGAGATCAACTTGCTCTTCGGAGGAACAGAAATCAAGGTGACAGCCGTAAATCCAACAGCCAACACACAGGCGACAGCTAAGCTGGACTTTTTGGCTTCAAATCAGTATAACGGTTAATGATAATAACTGTCGACTTCTTTCCATATCTAGAAGCTCGGCTAATCAATCGGAATTGATACCCATACTTCTAATACGAACAAGATCTAGAATTTTCAATCTTACCAGAAACAAAGGCTGCCACTCTTTGAGGTGAGGTAGATATGTCAAAAATACAGACGAGAGCAAAAATAATCGATCTTCCTCTGGAATGTTTATTTTCGCGGATAAACTAACTGGCGTAGCAAAGTTTTGTTATCGTCCTAATTTTTCTTTGTCCTCCCTCACCCTTTATTAGCGGATGATTACATATAGTAATCATGCATGGCAGTATTTCCACGGTATTTCCCAAAAACAAACGACTAGCGTGAGTAGGACCTACTCGATGCAAAATTCGATTTTTCCAAGAAACACGCGGATTTTCGATTTCACATTACGGAGAATTATAGGCTCCCGCGACATTTTGGTGACACGTTTGAGGCCATGGTTATTTTGGGTGGAATAGAATAGAAGAATCAGATCGTCCCCAAGAAGAATGGGCTGAATGGGGAAAACACTTGAGTGTTTTTGTGTTGAACGGCGAACATAGCAGTTTACACTTAAACATTAGCAAGCTATGAGGCCTATATACTATTCATTTTCAGTGAAATTGGGAAAGAGGTTTATACTTATCCGCTACCTGAGTACTATCCCACTCATTTTCGACTATTATTAATGTTTAACAATAATTTAGTAAGTATGCAACTCTGGAATTGGCCTATAACGATTAGAGGTTTGATTATTAAAACTAGGGTTAAGAATTGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O43301	Heat shock 70 kDa protein 12A OS=Homo sapiens OX=9606 GN=HSPA12A PE=1 SV=2
Q8K0U4	Heat shock 70 kDa protein 12A OS=Mus musculus OX=10090 GN=Hspa12a PE=1 SV=1
Q96MM6	Heat shock 70 kDa protein 12B OS=Homo sapiens OX=9606 GN=HSPA12B PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000530 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00012 all species →	HSP70	Hsp70 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013126 all species →	Family	Heat shock protein 70 family	Interproscan
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14187 all species →	ALPHA KINASE/ELONGATION FACTOR 2 KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gfas1.m1.20522.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of gfas1.m1.20522.m1 across 22 RNA-seq samples of Galaxea fascicularis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

22Samples

20TPM > 0

4Conditions

86.9Max TPM

42.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
coral holosome · Control	7	7	56.63	86.88
coral holosome · 30ic treatment	6	4	14.56	32.30
coral holosome · Prometryn (herbicidess) treatment	5	5	58.82	83.10
coral holosome · Prometryn (herbicidess) and 30ic treatment	4	4	41.17	54.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27118492	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	86.88
SRR27118485	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	78.04
SRR27118491	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	77.87
SRR27118487	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	46.57
SRR27118486	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	42.94
SRR27118488	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	36.75
SRR27118480	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	27.38
SRR27118466	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	32.30
SRR27118478	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	19.92
SRR27118479	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	17.65
SRR27118476	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	17.47
SRR27118468	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	0.00
SRR27118477	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	0.00
SRR27118483	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	83.10
SRR27118482	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	76.33
SRR27118481	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	55.27
SRR27118469	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	43.77
SRR27118484	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	35.64
SRR27118489	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	54.17
SRR27118472	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	39.76
SRR27118475	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	38.54
SRR27118490	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	32.23

Source: CnidoSite RNA-seq expression matrices (GFASC_TPM, StringTie quantification over 22 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.