Detailed information of gfas1.m1.2149.m1 in Galaxea fascicularis

Genomic Location: Sc0000073:140530...165286
NR annotation: CAH3142009.1, unnamed protein product, partial [Porites lobata]
Species Galaxea fascicularis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q64512Tyrosine-protein phosphatase non-receptor type 13 OS=Mus musculus OX=10090 GN=Ptpn13 PE=1 SV=2
Q12923Tyrosine-protein phosphatase non-receptor type 13 OS=Homo sapiens OX=9606 GN=PTPN13 PE=1 SV=2
Q68DX3FERM and PDZ domain-containing protein 2 OS=Homo sapiens OX=9606 GN=FRMPD2 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002205 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09379
all species →
FERM_NFERM N-terminal domain DomainInterproscan
PF00373
all species →
FERM_MFERM central domainDomainInterproscan
PF00595
all species →
PDZPDZ domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035963
all species →
Homologous_superfamilyFERM superfamily, second domainInterproscan
IPR001478
all species →
DomainPDZ domainInterproscan
IPR014352
all species →
Homologous_superfamilyFERM/acyl-CoA-binding protein superfamilyInterproscan
IPR036034
all species →
Homologous_superfamilyPDZ superfamilyInterproscan
IPR052074
all species →
FamilyNon-receptor Tyrosine-protein PhosphatasesInterproscan
IPR011993
all species →
Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR018979
all species →
DomainFERM, N-terminalInterproscan
IPR029071
all species →
Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan
IPR018980
all species →
DomainFERM, C-terminal PH-like domainInterproscan
IPR019748
all species →
DomainFERM central domainInterproscan
IPR000299
all species →
DomainFERM domainInterproscan
IPR019749
all species →
DomainBand 4.1 domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46900
all species →
TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0005856
all species →
Cellular ComponentcytoskeletonInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K23955FRMPD2; FERM and PDZ domain-containing protein 2-Domain-containing proteins not elsewhere classifiedko04990deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of gfas1.m1.2149.m1 across 22 RNA-seq samples of Galaxea fascicularis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

22Samples
14TPM > 0
4Conditions
55.6Max TPM
12.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
coral holosome · Control 7 2 3.26 13.46
coral holosome · 30ic treatment 6 6 25.53 55.56
coral holosome · Prometryn (herbicidess) treatment 5 3 9.96 18.54
coral holosome · Prometryn (herbicidess) and 30ic treatment 4 3 10.26 14.30

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (GFASC_TPM, StringTie quantification over 22 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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