Genomic Location: Sc0000073:140530...165286
NR annotation: CAH3142009.1, unnamed protein product, partial [Porites lobata]
Species Galaxea fascicularis · all data for this species · gene families
| CDS |
| gfas1.m1.2149.m1 |
| Transcript |
| gfas1.m1.2149.m1 |
| Protein |
| gfas1.m1.2149.m1 |
| UniProt accession | Description |
|---|---|
| Q64512 | Tyrosine-protein phosphatase non-receptor type 13 OS=Mus musculus OX=10090 GN=Ptpn13 PE=1 SV=2 |
| Q12923 | Tyrosine-protein phosphatase non-receptor type 13 OS=Homo sapiens OX=9606 GN=PTPN13 PE=1 SV=2 |
| Q68DX3 | FERM and PDZ domain-containing protein 2 OS=Homo sapiens OX=9606 GN=FRMPD2 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002205 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF09379 all species → | FERM_N | FERM N-terminal domain | Domain | Interproscan |
| PF00373 all species → | FERM_M | FERM central domain | Domain | Interproscan |
| PF00595 all species → | PDZ | PDZ domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR035963 all species → | Homologous_superfamily | FERM superfamily, second domain | Interproscan |
| IPR001478 all species → | Domain | PDZ domain | Interproscan |
| IPR014352 all species → | Homologous_superfamily | FERM/acyl-CoA-binding protein superfamily | Interproscan |
| IPR036034 all species → | Homologous_superfamily | PDZ superfamily | Interproscan |
| IPR052074 all species → | Family | Non-receptor Tyrosine-protein Phosphatases | Interproscan |
| IPR011993 all species → | Homologous_superfamily | PH-like domain superfamily | Interproscan |
| IPR018979 all species → | Domain | FERM, N-terminal | Interproscan |
| IPR029071 all species → | Homologous_superfamily | Ubiquitin-like domain superfamily | Interproscan |
| IPR018980 all species → | Domain | FERM, C-terminal PH-like domain | Interproscan |
| IPR019748 all species → | Domain | FERM central domain | Interproscan |
| IPR000299 all species → | Domain | FERM domain | Interproscan |
| IPR019749 all species → | Domain | Band 4.1 domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46900 all species → | TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005856 all species → | Cellular Component | cytoskeleton | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K23955 | FRMPD2; FERM and PDZ domain-containing protein 2 | - | Domain-containing proteins not elsewhere classified | ko04990 | deepkoala |
Transcript abundance of gfas1.m1.2149.m1 across 22 RNA-seq samples of Galaxea fascicularis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| coral holosome · Control | 7 | 2 | 3.26 | 13.46 | |
| coral holosome · 30ic treatment | 6 | 6 | 25.53 | 55.56 | |
| coral holosome · Prometryn (herbicidess) treatment | 5 | 3 | 9.96 | 18.54 | |
| coral holosome · Prometryn (herbicidess) and 30ic treatment | 4 | 3 | 10.26 | 14.30 |
Source: CnidoSite RNA-seq expression matrices (GFASC_TPM,
StringTie quantification over 22 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.