Gene detail

Detailed information of gfas1.m1.22562.m1 in Galaxea fascicularis

Genomic Location: xfSc0003886:543...5160
NR annotation: CAH3180322.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

gfas1.m1.22562.m1

ATGAGCTTTCACATCCCAGATTATGTCAATTTTAAACAGTTTTGCGTCGAAAGTTACGGCTCAATCGAAAATTTGATCACTAAAGCAAAGAATGGCAATGTTTTAGCCCAGGGAGACCTTGGTATGGCTTATTCTGAGGACTGTGATGATCTCCTTCCGAAGGACACCGACAAAGCGATTGGATGGCTGAACACTGCTGTAGAAAATGGCTGTGAGCATCCTGGTCTCCTGGGAAAAGTTGGTGAACTGTTGGATCGAAAAGGAACACCACAACATCGGCGAAAGGCGTACGAAATGTATCACAGGGCAGCCAAACTGGGTTGTTCGAATTCACAAATCAACCTTGCAGAAATGTATCGCTGTGGTGTTGATGGTGTTGTGAACGAAGACCTCTGTGAAGCGTTTAAATGGTACAAAAAGGCCGCTGGCGAAGACCAGTCAGATGAATTAGATCTGGGAGTACTTGACAGACAGCGTTTTGGCACGATAAAAAAATTGGCAAACGCTGCCGGTGGCTTTTCGGAACAAAAGGCCGCCCTTCAATTTTTGTTCAAGTACTATCTCGAGGGGGATTGCCCAGAAGACCGACCACAGCCAACTAAAGCAGTTTATTATTTAACCAGGGCAGCTGAACTCGGTGATACTGAGGCACAGCGGAATTTAGGAAAAATATACCTATCTGGAAACTGCGATCAAATGAAAGATGTCTCAAAGGCAAGGAGATGGTTCGAAAAAGCTTCTGCTAATAGTGACGTCAGGGCGAAAAAGCTTCTTGAGCAATGTAAAGAAAATGCTGGTACACAGCCTGCTGCATCAGAACCCAGTGAAGAGGCTATAACTCAGTCATTTAGTATCATGAACGAGAAACTTCAGCAGAGATATGATGCAAATATACATCCATTTGTAATTTCTCAACCTGTGGCCTTCTCAGAAGAAATGCTTAACGAGTTTGAATGGTCCCAAACAGCAAGAATTTACCGTCAAGCCTTTAAACTGGTAAAAGAGGGATTTGAAATTCTTTGTAACAGTAACTTCAGTGATGATAAAGGAAATTCTCTCATAGCTCAAGGGTATCTGACTGAGAATTCTATACTACAATCATTTCCTCAGAAACAAGTTCTGGCGCCTCGGATCTTGGAGCTTTGTGAGAAAAGCTTGCAAAATAACCCATGTTTCTTTGAAAGCCTTGTTTTGTCTTATGCCTTAAAGGGTTATGAGAAGAAGTATAATGAGACCATCAAAACAGATCTAAGAAAAATCATGTGCCTGAAAAACGTGATTCATTTTATCCAAAATGCTGAGCTTAACTGCATCCCTATTGAACATCCTTTCAAATTTGATGAGAGCTACAGTAGCTGGCTCCATGTTTTGTATTATCATGTGGGAGCAATCTATGTTGTGGCAAGATCCTATGAGTTAGCTGCTGAAGCTTTTGATAATTCCCTGAAATGTTGTCCATCTTACTTTCTGCCTAAAAGACTGCTTGGTTATTGCTTAATGATGCTCTACGGCTCAAGAGTGGCCCCCAAAATACAGATTTCTTTAGCTAGTCAAGGTACGCCAACACACTTGGAACCCGACCCACAAAACAAACAAAATACAAAGTTTAGAGAAATATCAAAATATTCATCATGGACGAACAAACAGTTGGCAGACATGGCAGAGAAAATGATGAAAGAGTATCTAGCTGAGGCTCCACTTTGCTGGCAATATTACCCAAATGTTTTCTATTATCTTGCGTACCTTGCAGTCCTGAACGAAAACATGAGTGAATTTAAAAAGAATTATGAACTTGGCCAAGATGCCGAAGGAAAGAGACTTCCTTTCTTTAATCCTGTTAATCTACCTTTGAAAGATATCATGTCTCCTCTGTACCAAATTTTTGCAAGTTTACCTGAGCCAGTTAAGTGTGGCAACAAAGCCTGCACCAAGAAGGTGAAAGAAAGTGAGCTGAAGTCATGTGCTGGCTGTGGCAAGCAGAGGTACTGTAGCAGGGACTGTCAAAAAGCAGACTGGAAGAATCACAAAGCTACTTGCATTGTTTCTAAAGAACACAAAGGAAAGGGGAATGCCTGA

Transcript

gfas1.m1.22562.m1

GTCTTTCTCCCGGCAGGGGCCAGGAGACTCTGAGGGTGAGAATGGGTACTAATTCCAGGTACTTCCGGGCTACGTTATGACCCGGGAGGGCCTGGTTCTCGTTTTGAGTTCTGCGATTCGGCCATTTTCACACACCGCATCATGAGCTTTCACATCCCAGATTATGTCAATTTTAAACAGTTTTGCGTCGAAAGTTACGGCTCAATCGAAAATTTGATCACTAAAGCAAAGAATGGCAATGTTTTAGCCCAGGGAGACCTTGGTATGGCTTATTCTGAGGACTGTGATGATCTCCTTCCGAAGGACACCGACAAAGCGATTGGATGGCTGAACACTGCTGTAGAAAATGGCTGTGAGCATCCTGGTCTCCTGGGAAAAGTTGGTGAACTGTTGGATCGAAAAGGAACACCACAACATCGGCGAAAGGCGTACGAAATGTATCACAGGGCAGCCAAACTGGGTTGTTCGAATTCACAAATCAACCTTGCAGAAATGTATCGCTGTGGTGTTGATGGTGTTGTGAACGAAGACCTCTGTGAAGCGTTTAAATGGTACAAAAAGGCCGCTGGCGAAGACCAGTCAGATGAATTAGATCTGGGAGTACTTGACAGACAGCGTTTTGGCACGATAAAAAAATTGGCAAACGCTGCCGGTGGCTTTTCGGAACAAAAGGCCGCCCTTCAATTTTTGTTCAAGTACTATCTCGAGGGGGATTGCCCAGAAGACCGACCACAGCCAACTAAAGCAGTTTATTATTTAACCAGGGCAGCTGAACTCGGTGATACTGAGGCACAGCGGAATTTAGGAAAAATATACCTATCTGGAAACTGCGATCAAATGAAAGATGTCTCAAAGGCAAGGAGATGGTTCGAAAAAGCTTCTGCTAATAGTGACGTCAGGGCGAAAAAGCTTCTTGAGCAATGTAAAGAAAATGCTGGTACACAGCCTGCTGCATCAGAACCCAGTGAAGAGGCTATAACTCAGTCATTTAGTATCATGAACGAGAAACTTCAGCAGAGATATGATGCAAATATACATCCATTTGTAATTTCTCAACCTGTGGCCTTCTCAGAAGAAATGCTTAACGAGTTTGAATGGTCCCAAACAGCAAGAATTTACCGTCAAGCCTTTAAACTGGTAAAAGAGGGATTTGAAATTCTTTGTAACAGTAACTTCAGTGATGATAAAGGAAATTCTCTCATAGCTCAAGGGTATCTGACTGAGAATTCTATACTACAATCATTTCCTCAGAAACAAGTTCTGGCGCCTCGGATCTTGGAGCTTTGTGAGAAAAGCTTGCAAAATAACCCATGTTTCTTTGAAAGCCTTGTTTTGTCTTATGCCTTAAAGGGTTATGAGAAGAAGTATAATGAGACCATCAAAACAGATCTAAGAAAAATCATGTGCCTGAAAAACGTGATTCATTTTATCCAAAATGCTGAGCTTAACTGCATCCCTATTGAACATCCTTTCAAATTTGATGAGAGCTACAGTAGCTGGCTCCATGTTTTGTATTATCATGTGGGAGCAATCTATGTTGTGGCAAGATCCTATGAGTTAGCTGCTGAAGCTTTTGATAATTCCCTGAAATGTTGTCCATCTTACTTTCTGCCTAAAAGACTGCTTGGTTATTGCTTAATGATGCTCTACGGCTCAAGAGTGGCCCCCAAAATACAGATTTCTTTAGCTAGTCAAGGTACGCCAACACACTTGGAACCCGACCCACAAAACAAACAAAATACAAAGTTTAGAGAAATATCAAAATATTCATCATGGACGAACAAACAGTTGGCAGACATGGCAGAGAAAATGATGAAAGAGTATCTAGCTGAGGCTCCACTTTGCTGGCAATATTACCCAAATGTTTTCTATTATCTTGCGTACCTTGCAGTCCTGAACGAAAACATGAGTGAATTTAAAAAGAATTATGAACTTGGCCAAGATGCCGAAGGAAAGAGACTTCCTTTCTTTAATCCTGTTAATCTACCTTTGAAAGATATCATGTCTCCTCTGTACCAAATTTTTGCAAGTTTACCTGAGCCAGTTAAGTGTGGCAACAAAGCCTGCACCAAGAAGGTGAAAGAAAGTGAGCTGAAGTCATGTGCTGGCTGTGGCAAGCAGAGGTACTGTAGCAGGGACTGTCAAAAAGCAGACTGGAAGAATCACAAAGCTACTTGCATTGTTTCTAAAGAACACAAAGGAAAGGGGAATGCCTGATTGTTGTTCTGGTTATGGGTGTGTATTTCAAACCAAACTGGATAACTTAACCTCAAGCTGTCTTAAAAGTGTTCAAGATTTTAACATGAAAGACGTTAATGTTTATTTAAGTCATCGTGTAATGAGGCTGCAATGAATTCATCACAAGTACGAAACACATCGTCTACATCTCCTCCCGTACTGAGGTCTCCGGAAATACGTTAAATATGCACTTGTATGTGTTTTCTGAGACATTTGAATGAAAATGATGGCCCGCGTTCTTTTTAACGACTACTCTTGTCCACGGAAACTGTTGTACTTTGATAACATCTTGAATATGTTTTCCAAGCTCTTTCCTCCTGTTTGTGGTAAATCAAGTTGGCATACAGCTGTCCCCTCTCCAATTTCTATGGGGAAGGAGTGGTTTTATTCAGGTTGAGGTGGAACTGGTAATACCGGTAACTTAATTTCCTTCATTTGATCTGAACATTGATCTAGAAGCCAATCA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01753	zf-MYND	MYND finger	Domain	Interproscan
PF08238	Sel1	Sel1 repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR002893	Domain	Zinc finger, MYND-type	Interproscan
IPR006597	Repeat	Sel1-like repeat	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR050767	Family	Sel1/AlgK	Interproscan
IPR013289	Family	CBFA2T family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11102	SEL-1-LIKE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003714	Molecular Function	transcription corepressor activity	Interproscan
GO:0045892	Biological Process	negative regulation of DNA-templated transcription	Interproscan