Gene detail

Detailed information of gfas1.m1.2434.m1 in Galaxea fascicularis

Genomic Location: Sc0000088:155216...159052
NR annotation: XP_020628646.1, pituitary homeobox x-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

gfas1.m1.2434.m1

AAAAAAGGCGCACTGTGATTGGCTGACGGCCTTTTGCAGCCTCACAGTACAGTTTGAAAAGAAACTCACTGACGCATTAAGTTTCAGACTCGACTTGGACACATGCTGGTTGGATCAAGGCCGAACCTATAACGTGCCAGATTGCCCCCGACAATCAAGGACAACCATACTAAAGTCCAGTTCAGCGTCTTAGGTGACTTAAAGTTTTTTCACTGCCACAAGAGAGTCATCGGCTGCGGACATTTTAACCAGCACCAAACTAACCTAGAGGGATGAGTTCGCCCAGGGATTCACCGGAGTTAGCTTCTTACGACATTAACAACAACCAACCGAACAAGGAGTTGTCCGAAAAGAGCACGGACTCTCTCGAAGAAAGCGCGTCCGTGGATGGAGACAGCGTCAAGCCGAAGCGAAAGCAGCGACGACAGCGGACGCACTTCACCTCCTATCAGCTCCAGGAGATGGAAGCAATGTTTGCTAGAAACCGATATCCAGACATGGCGGTTAGAGAAGACATTGCTTTGTGGACAAGCTTGACAGAGGCAAGAGTCAGGGTGTGGTTCAAAAACCGCCGGGCAAAATGGCGAAAGAAAGAGAAGAACAACCCGACAAACATACTTGGACAAGACAAGGGTGGCACAATTATTCCAAGCGTGAACGGATTTTACGAAAGCCCTAGCTCCATTCGCTATGAAAGCTCCGAAACACCGCCGTCAGTTTATCCCAATTACACCTCGAACTACTGGAGTAAGGGAGCTCCAAGCCTTGGCTACAGTTCATTGCAACCAGCAAGCAACAGTCTCGGCTATAACTCTTTCAGCCAAATACCCCAACCTTGTCCCGTACCACCGCCAATATCGGGCTCTCTGAGTCCCTTTTCAACTCCGATGTCGAATGACAACAACTCGCCCTCTTACGCGGCCAGTTCTTCCAGCGTATCTAGTGTTCCTTGCGGTTATCCACCAGCTTATGGCTATCAAGAACAGAGCTCGATGTACTTAAAAGGCAAAAGTTCTTCGATGAATCACCACCCGAACTTTTCGCAAGCTAATCCGTACAGCTCATACCCTTACGGGATGGCCGAAATTCCAATTAATATTTAGAACAGCAATGCGAGGCGAACGTGGACAAACAATATCTGAGATTCAGTGATGTTACTTTTGTGGAAATACAAGGAAACATTGTTTTTAAGGAGCCTCTCAAGTAAAAGTTAGTTGCAAGAAGCAGGATTTGTTTTTAAAGTTTGATTTCAAGGTTGAAAACCATCGTGACATTACCATCAATGTAATTAAAAGCCAAAACAATTCTCTTGAAGTTAATAGATTCAATCTAGGTGAGGCTTGAGTGTTTTGTCCTGAATACAAATTATTTTAAAAGGTTTAATTTCAGTGAGATTCAATGTATTTTAAGTAGTTTAATGAATGAATGGCATGAACAAGATGCTAAAGTAGTGAAATTATGAAAAAAGGTTAAATTTTCCCTTGCAAGAATGTAATATTGCATGATATTCTTTAAGGGAGACGCTATTTAGCCTCATGCTTCATCGACATTCAAATTTTCCTTTTGTTCCCACCAGACCATTGACGCATATTATCAGGAACGAAATAGCGAAGTTTTCGCATGTTTGCAGAGGTTAATTCGCCTAAATCTGTCCACTCATTGAGCTAAGAACGTTTTGATAGCGGTTATAAGCGTTTCCTAATAATGGTTTTGTCTGAGACCCGTGTAGTTCTCGCTTACTAATCCGTGCTACATTGACTTAGTTATTAAGGTAATATCAAACCATTCTTGTATAAGACGATGAGCTGTTGAAAAGTGCTAAGTAAAATGAATAAGTCTTTCCTTTTAATCTTAGCTGTGAGAAGTCACAACTCGCAAGCGTTTTCCTGGGACACGCCCGTTGCCGATCGTAACGGCATTTCGAAAAGCGCGCTTGCGACTTCGAAAAGCACGCTTGCGTCTACGTGCTGGCCTCAAGTGGCCAGAACAAAAGACAATTGCGACAGAATTTTAATGCAACCTCTATAGTCCTCGTTGTTTTGCTCTGGGAATTTTCAGCTGTATTTAAGTTTGTACAGTCAATAAAAGACTAAATGTTGTG

Protein

Uniprot

Gene family

Uniprot term	Description
Q9R0W1	Pituitary homeobox 2 OS=Rattus norvegicus OX=10116 GN=Pitx2 PE=2 SV=1
Q9PWR3	Pituitary homeobox 2 OS=Xenopus laevis OX=8355 GN=pitx2 PE=2 SV=1
Q99697	Pituitary homeobox 2 OS=Homo sapiens OX=9606 GN=PITX2 PE=1 SV=2

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45882	PITUITARY HOMEOBOX HOMOLOG PTX1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0009653	Biological Process	anatomical structure morphogenesis	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09357	PITX3; paired-like homeodomain transcription factor 3	-	Transcription factors	ko03000	deepkoala