Gene detail

Detailed information of gfas1.m1.2467.m1 in Galaxea fascicularis

Genomic Location: Sc0000090:185469...209192
NR annotation: CAH3032299.1, unnamed protein product [Porites lobata]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gfas1.m1.2467.m1

ATGGCGCAAACTGCTCGGGTCGATGCGAGTAACGGTGCAAGAAGTCGTCGCCTTCAACTTCCCAATAAGGAGCCTCTATCAAACACGGAACGTACAAATCATCATTTTAAATTTCCTGCAACGGGCGGAGATTTTTTCCCCGACCCATACGTACGAGAGAATGGTTCAAGTAGTGTTGTAGGTCCTCAAAACCAAGGTATTTTGGAAGGGCTGCGCGAATATATTCAAGGTTCGGAACATCACACCGATAACAACAATAAGGGAAATTCCTTGCCTAACAAAATGGCGACGTCGAGTTCGAGTGCAACGAATCCCAAAACGGCGAACGCTAACGGATTTGAAATGTCCATGAATTCGTCCACGGGACTGGCAAACAAGACTGGAGCAAGCAGTTTGGGAATACCCTCCACCGTCCACCTAAACAATCAACTTTCATCAATTCTCGACCCAGGAAGTTCGGCGGCGAACGCGGTCGCCCCGTCCAGAAATCTTACTCAATCGAACTCTAATCCCGCAAATATAAAACTTTTGGCGTCAAATCAGCCATCTCTATCACCACAAAACCGGTATAATCAATACAATCCTCGACAGGATATGTTACTCCATGGATATCGCGAAGTTCCCATCGCACCTAGAGCGCCGAACGTATCGGAACAATATGGCTCCCAACAAAGCTTTGTTTCTGCTCAGAGTGAAAATCAACTGAAAAGGGGGTTAAATCCCCAAACGTCGAGTCCGTATCCACCGTCTTATTACGGTCAGGACTCGAGCACGTCGCAGGCTAGCCAAAGAACGGCTAACTCGCAACCAGATGATCGAAATATGATTACAAACCAACATTTTCAGTGGCAGAATCGGCTGCAGACGTCGAACCATTGTTCGTCAAATTTACCAGCAAATAGTTCTCCTGGCCCGCCAATGGGCCGCACTCAGTTGCAGCAACCAGGAATTCCGCCGCCACAGTCGCCTTACATGATGATGGGCAGCTCACAACAGCAACAGCAATCTCAGCAGAGTACACTCCAACAGTCGTACCCACCATATATGATGCAACCAGGAGGGATAAAGTCTGGGGGTATGCCAGCCCAGTCACAACAGTACTATGGAAATACGAGTATGGGGCGGCATGCTATGGGACAATCTAATTTAACAGGACAGGCTCAGAGAATGGCAAATCAAATGCCAAAACCTGTTCAAGATTACAGTGGCTTTCAACAGCAACAGATGCAGCACAGATATCCTCAGCCTCAGTATGCACAGCAAATGTCTTACATGCGTCAGCAACAGCAGGGACAACAGCAACAGCAACCATCATACCCACAACCACCAGCTGGAATGCCAAGAATGCCTGCCTCCCACCCTCAACCAATCCTTCCAAAGCCATCCTCTAGTGACATGGTTGGAAGGTACTCCAGTAACAGTGTAAGCGACAGTCTACCAGGGCAGGACTATGGCACAAACAGGATGGCAGACCAATCACAACATGCAATGCCACCAGTATCTGCCTCTTATGGGAATCCACCTATGGGAAGGATGGCTGCATCTTCAGATGTGCTTGGCAAATATGGAAGCAGTCAAGGCGGATATCAACGAGGCAACCCACCACCATTTCCTGGATCTCTTCACTCAAGGCACACGCCTTCTCCTAACGTCACTCTAGGATCACCTTTAAGGAATGTCCCTGAAGGCACTTCCCAGTCTGTTGGTATGCCTAATTTTGGACGCGATAGCCCTACTTCCACAGGAAGCATGCCAAACTACCCTCCTGGAAAACTTGCTTCACCATTTGGGATGGGAGGAAACCAGATGTCAGGATCTGGAGCAACCAGCAGTAGTTTACCATCTGCCAGTGCTGGAGGCTCAATCTTCTCCAGTACTGGGGCAGGTGATGGTGGACCAGCTGCTGCAGCTGCCGCAGCAGTTCTTGAAGCTGTGAATACTGGAGCAAGATTCCCAGGCTCATCGCAAGTGCCAGGGCAGCCATATGTCACCCCCCAGGAAATGATGTTGAGTGGTAAGGCGTCTGAGAGTGTAACACCTTCTGGGTTGTCACCAATGCAGTTAGGACCTATGATGGTAAACGTGCAAACAGGACGTGTGCCATCTCCAACACTGAATGAGTTACCCACGGCAGAGGATGTAGAAGCAATGATTGAATCTATGCGGGCAGGGGAGACTTCACTGCCCACAGATAATGGTGACCAGCCTCCACCATCTCAAGGATCTGCCCCACCATCTGTAGCTACAGTGGAATCATCACCGCAACCACAAACAACTCCTAGTAATGCTCAAAACAGTACCAGTGATTCTCAACAGCTTAGCAACTCAAATTTAGACATGCCTGGTATGGGAAAAGAAGAGGCACCACCGTCCCCTCCCTCATCACCTCTTTCAACATTCTCTGGCCTGTCCCCTGGAGTTTCACCATCAGGCTTATCCATAACATCATCATTTGGCGATGCAGAAATTGACCTGAATGAAATAAACCCCTCTCTACCTAACAATCCCATCTCCATGTTCTCCAAGTTATATGAACTTTCTGATGAACCGGAGCGGAAGGAGTTTCTTGATAAATACCAAGCATTCATGAGCAGTCAAGGCACTCAGATCACCCAGGTTCCTGTGGTAATGAGGCAACCTCTGGACCTCTTCAAATTTTTCACAGTGGTCAGAGAAAGAGGCGGAGTACAGGAGGTCGTCAGGAGAAAACTCTGGCAAGAAGTTTTAGAAGCTTTAAACCTGCCCACCGACATGCCGAGTGTTGTGAATGTTCTTCGGAACCAGTATTCCCGATATTTACTGTCTTACGAAATGAAGCATACCAAAACAAACTCAATCGACGACATCAAGATTAACCTTCTAGAAGGATCGGGCATCCCACCACCGAATGCAACTGTAACTTGTTCAGAGGCAATAATACCAACAAGCAGTCTTACACAGAGCCAGAGAACGGCCGACTCCTCCTCAGTCCATGGATCATACAGTTCAATAACAAACGAATCTTCCACGAATCTGCCACCGAGCTATAATGCCAGGGATGCATATACTGAGCCAAGTTACGACAGCAGTGGTAAATTCTTCTCGGATTTAAGGGACAATTCCGGTAATTTTCAAGCAAATCAACCCGCTCCATCCAATACATTTGGAGTACCCCAGTTCTCGTACACTGGGGACAACAGAAGGCATAACGGTAGCATTGCAAGTCTTCCTCAGGACAGGCTCCCCTCGTACATGATGTCGCAGCGTAACATGTACGCCAGTCATTCATCCATGTCACCATTCTTTCAGCAGTCCAGCCAACAAACAGGACATCCAACTTCCAACTATCCTCATTCTCAGTACCAGCAGCGTGCAAGCCCCTCATTGATGGGGGCTCTTTCGTCATCTCACTCCATGATGCCCAGTGCAAGCCCCCAGGAGAAAATGCATCCATTATGGGGCTCTCAGTACAGCCCTTCAACCGAACCAGAGCACATGGTTGATTACCCTCCTGGGGCCCATAGCATGAGGGTTCCTCGCTCGTCAAATACTCTTAACATCCTGCTATATGACGACAATACTGTTGCCTACTTCATGTTATCTCAACTGCCTGGTCTCCTTGACAACCTGATCGATCACTTCCGGCGGTATTTGATGGCGATTTTTGGCGCATTTGGTGAGAGTGAGATTAGTGTGGGTGCTAAGGTAATCGAGGGAATAACGGAGGAGAAGAAAAACGAGTATAGAACGAGTGCTGGCACAGGAGGTGAGGAAGCGATTGAAGAGATAAACCGAAAGGCAAGACAAAGTTTTACGGCGGTGCTGGTGGGTTCTACATTCGAGTTTAACAAGGAAGGATTTCAGAGTGGAGCCAGTGACTGGCTGATGGGAGGTGGTGACACAACACGCCACATACAGACGCATATGGGATCTATGCCTGGTAAAGTTTACTACAACAGTGAGACGTTGGAAAGAGAGAAGGATGATAAGTTCGTGGAATGTGAGACAGAAGTGAAAAACGAGACTGAGGAAACTCAATTGTCTGAACTTAGCAAGGAAAAGTCAGAGACTTTGTGTACGGATGTTCGTTGTTCCAAGAAGGAAAACTGCGCTTCTAATTGTACTGAACTAACAAAGGATTCATCTTATTCCGAGTTTAAGGAGGATTCAGAATCTAAACCTGACATTGTTGTTAAATCTGAGGAGACGCCGACACAGGTGGAAAAAGCGAAGCCAAACGACACGTGTAGCACGGAATCGGAAGAAGTGTTTACCTCGCGGTTAAAAAAGGAGCTTGATTTAGACTTAGACTCCGAAATAGAGGATTCCGAATCAGACAGTTATATACAGACAGAAGTTGTTGGTAAAATAAACGTAAAACGAGAACCCGTTATCGAGGAGCAGTCATGCGGCAAAGAAGACGCGCCGCTATGTTTGAGAACTGAGACCCAGGACGCCGTATCTCGGCGTTGTCTTTGCGTGTCAAACATTCTTCGAGGGCTTTCCTTTGTTCCAGGAAACGACGCGGAGATGTCGCGTCACGCGGGATTGCTCTTGATCGTCGGTCGGCTGTTACTTCTGCATCATAAGCACGCCAAGCGTGTGCCGTATCGGCACTCATATCTCCAAGATGACATCGAAGTGGAATGCCCCAGTGATGACCGGCACGATTGGTGGTGGTACTGCTTGGAAGGCTTAAGAGAAAATGCGTTGGTGATTACGGCAAATGTGGCGGGACAGCTTGACCTGTCACTGTACCCTGAAGCCATCAGCTTGCCTCTCTTGGATGGGCTGCTGCATTGGTTTGTTTGTCCAGCCGCTGCCGCACAAGACCCTATGCCCACTGCCACCCCGGGAACCTCACTCTCCCCAAGGCAGCTTGCACTCGAGGCTCTAGCCAAGATGAGCATATTAGAGTCGAACGTAGACATGATCCTTTCGTCGCCTCCATTAACTCGCGTGGAGGAGTTGTACACCATGTTGGTTCGTCTTGTCGGCGAGAGGGGCAACCCGGTGACCCGTGAACTTGCGCTCGTACTTCTTTCCAACCTTGCTCAAGGAGAGAATTCCTTTGTGGGTTTCGGAGATACCAAGGCTTGTATTTCAATGTTGTTAGAATTCATCGAGGATGCCGCCTCCAGCATGAATGCGTATTCTTCAGGCAGCGCCCTAGCACAGGCTGGATTCCACTCGGAGAACTTTTGTGGCACTAGTGTGGACATGTTGCGCAGAGCTTCTTCCACGCTTGTGTGTCTGGCACGTATTCGCTCGAATCGAGCGCTGTTTTTGCCGTTCCAGCAGAGAGTCTTGCGCCTCGCGATAATGCGGATCCTGGACCACATGATCACGAGCCAGCTGGCGGAGATTCTCTTTTACTTATCAAGGTGA

Transcript

gfas1.m1.2467.m1

TCAAACACGTGCTGACTATAGATGGCTGCTGGTGTGTGAAAAGCTTTCACCGTCGGCAACCCGAAAAGGCGGTAATTTTCTACAACGTCAAACATCGCCAGGCAAGCAGCAGCGACACGTGCAAGTTTACAAACAATTTCAGAGGCTTTGGAATTTTTTCCTAAGTCGGTATGGTGTCGTAGAAAGTCTGTGGGCGCTATTGAATGGCGCAAACTGCTCGGGTCGATGCGAGTAACGGTGCAAGAAGTCGTCGCCTTCAACTTCCCAATAAGGAGCCTCTATCAAACACGGAACGTACAAATCATCATTTTAAATTTCCTGCAACGGGCGGAGATTTTTTCCCCGACCCATACGTACGAGAGAATGGTTCAAGTAGTGTTGTAGGTCCTCAAAACCAAGGTATTTTGGAAGGGCTGCGCGAATATATTCAAGGTTCGGAACATCACACCGATAACAACAATAAGGGAAATTCCTTGCCTAACAAAATGGCGACGTCGAGTTCGAGTGCAACGAATCCCAAAACGGCGAACGCTAACGGATTTGAAATGTCCATGAATTCGTCCACGGGACTGGCAAACAAGACTGGAGCAAGCAGTTTGGGAATACCCTCCACCGTCCACCTAAACAATCAACTTTCATCAATTCTCGACCCAGGAAGTTCGGCGGCGAACGCGGTCGCCCCGTCCAGAAATCTTACTCAATCGAACTCTAATCCCGCAAATATAAAACTTTTGGCGTCAAATCAGCCATCTCTATCACCACAAAACCGGTATAATCAATACAATCCTCGACAGGATATGTTACTCCATGGATATCGCGAAGTTCCCATCGCACCTAGAGCGCCGAACGTATCGGAACAATATGGCTCCCAACAAAGCTTTGTTTCTGCTCAGAGTGAAAATCAACTGAAAAGGGGGTTAAATCCCCAAACGTCGAGTCCGTATCCACCGTCTTATTACGGTCAGGACTCGAGCACGTCGCAGGCTAGCCAAAGAACGGCTAACTCGCAACCAGATGATCGAAATATGATTACAAACCAACATTTTCAGTGGCAGAATCGGCTGCAGACGTCGAACCATTGTTCGTCAAATTTACCAGCAAATAGTTCTCCTGGCCCGCCAATGGGCCGCACTCAGTTGCAGCAACCAGGAATTCCGCCGCCACAGTCGCCTTACATGATGATGGGCAGCTCACAACAGCAACAGCAATCTCAGCAGAGTACACTCCAACAGTCGTACCCACCATATATGATGCAACCAGGAGGGATAAAGTCTGGGGGTATGCCAGCCCAGTCACAACAGTACTATGGAAATACGAGTATGGGGCGGCATGCTATGGGACAATCTAATTTAACAGGACAGGCTCAGAGAATGGCAAATCAAATGCCAAAACCTGTTCAAGATTACAGTGGCTTTCAACAGCAACAGATGCAGCACAGATATCCTCAGCCTCAGTATGCACAGCAAATGTCTTACATGCGTCAGCAACAGCAGGGACAACAGCAACAGCAACCATCATACCCACAACCACCAGCTGGAATGCCAAGAATGCCTGCCTCCCACCCTCAACCAATCCTTCCAAAGCCATCCTCTAGTGACATGGTTGGAAGGTACTCCAGTAACAGTGTAAGCGACAGTCTACCAGGGCAGGACTATGGCACAAACAGGATGGCAGACCAATCACAACATGCAATGCCACCAGTATCTGCCTCTTATGGGAATCCACCTATGGGAAGGATGGCTGCATCTTCAGATGTGCTTGGCAAATATGGAAGCAGTCAAGGCGGATATCAACGAGGCAACCCACCACCATTTCCTGGATCTCTTCACTCAAGGCACACGCCTTCTCCTAACGTCACTCTAGGATCACCTTTAAGGAATGTCCCTGAAGGCACTTCCCAGTCTGTTGGTATGCCTAATTTTGGACGCGATAGCCCTACTTCCACAGGAAGCATGCCAAACTACCCTCCTGGAAAACTTGCTTCACCATTTGGGATGGGAGGAAACCAGATGTCAGGATCTGGAGCAACCAGCAGTAGTTTACCATCTGCCAGTGCTGGAGGCTCAATCTTCTCCAGTACTGGGGCAGGTGATGGTGGACCAGCTGCTGCAGCTGCCGCAGCAGTTCTTGAAGCTGTGAATACTGGAGCAAGATTCCCAGGCTCATCGCAAGTGCCAGGGCAGCCATATGTCACCCCCCAGGAAATGATGTTGAGTGGTAAGGCGTCTGAGAGTGTAACACCTTCTGGGTTGTCACCAATGCAGTTAGGACCTATGATGGTAAACGTGCAAACAGGACGTGTGCCATCTCCAACACTGAATGAGTTACCCACGGCAGAGGATGTAGAAGCAATGATTGAATCTATGCGGGCAGGGGAGACTTCACTGCCCACAGATAATGGTGACCAGCCTCCACCATCTCAAGGATCTGCCCCACCATCTGTAGCTACAGTGGAATCATCACCGCAACCACAAACAACTCCTAGTAATGCTCAAAACAGTACCAGTGATTCTCAACAGCTTAGCAACTCAAATTTAGACATGCCTGGTATGGGAAAAGAAGAGGCACCACCGTCCCCTCCCTCATCACCTCTTTCAACATTCTCTGGCCTGTCCCCTGGAGTTTCACCATCAGGCTTATCCATAACATCATCATTTGGCGATGCAGAAATTGACCTGAATGAAATAAACCCCTCTCTACCTAACAATCCCATCTCCATGTTCTCCAAGTTATATGAACTTTCTGATGAACCGGAGCGGAAGGAGTTTCTTGATAAATACCAAGCATTCATGAGCAGTCAAGGCACTCAGATCACCCAGGTTCCTGTGGTAATGAGGCAACCTCTGGACCTCTTCAAATTTTTCACAGTGGTCAGAGAAAGAGGCGGAGTACAGGAGGTCGTCAGGAGAAAACTCTGGCAAGAAGTTTTAGAAGCTTTAAACCTGCCCACCGACATGCCGAGTGTTGTGAATGTTCTTCGGAACCAGTATTCCCGATATTTACTGTCTTACGAAATGAAGCATACCAAAACAAACTCAATCGACGACATCAAGATTAACCTTCTAGAAGGATCGGGCATCCCACCACCGAATGCAACTGTAACTTGTTCAGAGGCAATAATACCAACAAGCAGTCTTACACAGAGCCAGAGAACGGCCGACTCCTCCTCAGTCCATGGATCATACAGTTCAATAACAAACGAATCTTCCACGAATCTGCCACCGAGCTATAATGCCAGGGATGCATATACTGAGCCAAGTTACGACAGCAGTGGTAAATTCTTCTCGGATTTAAGGGACAATTCCGGTAATTTTCAAGCAAATCAACCCGCTCCATCCAATACATTTGGAGTACCCCAGTTCTCGTACACTGGGGACAACAGAAGGCATAACGGTAGCATTGCAAGTCTTCCTCAGGACAGGCTCCCCTCGTACATGATGTCGCAGCGTAACATGTACGCCAGTCATTCATCCATGTCACCATTCTTTCAGCAGTCCAGCCAACAAACAGGACATCCAACTTCCAACTATCCTCATTCTCAGTACCAGCAGCGTGCAAGCCCCTCATTGATGGGGGCTCTTTCGTCATCTCACTCCATGATGCCCAGTGCAAGCCCCCAGGAGAAAATGCATCCATTATGGGGCTCTCAGTACAGCCCTTCAACCGAACCAGAGCACATGGTTGATTACCCTCCTGGGGCCCATAGCATGAGGGTTCCTCGCTCGTCAAATACTCTTAACATCCTGCTATATGACGACAATACTGTTGCCTACTTCATGTTATCTCAACTGCCTGGTCTCCTTGACAACCTGATCGATCACTTCCGGCGGTATTTGATGGCGATTTTTGGCGCATTTGGTGAGAGTGAGATTAGTGTGGGTGCTAAGGTAATCGAGGGAATAACGGAGGAGAAGAAAAACGAGTATAGAACGAGTGCTGGCACAGGAGGTGAGGAAGCGATTGAAGAGATAAACCGAAAGGCAAGACAAAGTTTTACGGCGGTGCTGGTGGGTTCTACATTCGAGTTTAACAAGGAAGGATTTCAGAGTGGAGCCAGTGACTGGCTGATGGGAGGTGGTGACACAACACGCCACATACAGACGCATATGGGATCTATGCCTGGTAAAGTTTACTACAACAGTGAGACGTTGGAAAGAGAGAAGGATGATAAGTTCGTGGAATGTGAGACAGAAGTGAAAAACGAGACTGAGGAAACTCAATTGTCTGAACTTAGCAAGGAAAAGTCAGAGACTTTGTGTACGGATGTTCGTTGTTCCAAGAAGGAAAACTGCGCTTCTAATTGTACTGAACTAACAAAGGATTCATCTTATTCCGAGTTTAAGGAGGATTCAGAATCTAAACCTGACATTGTTGTTAAATCTGAGGAGACGCCGACACAGGTGGAAAAAGCGAAGCCAAACGACACGTGTAGCACGGAATCGGAAGAAGTGTTTACCTCGCGGTTAAAAAAGGAGCTTGATTTAGACTTAGACTCCGAAATAGAGGATTCCGAATCAGACAGTTATATACAGACAGAAGTTGTTGGTAAAATAAACGTAAAACGAGAACCCGTTATCGAGGAGCAGTCATGCGGCAAAGAAGACGCGCCGCTATGTTTGAGAACTGAGACCCAGGACGCCGTATCTCGGCGTTGTCTTTGCGTGTCAAACATTCTTCGAGGGCTTTCCTTTGTTCCAGGAAACGACGCGGAGATGTCGCGTCACGCGGGATTGCTCTTGATCGTCGGTCGGCTGTTACTTCTGCATCATAAGCACGCCAAGCGTGTGCCGTATCGGCACTCATATCTCCAAGATGACATCGAAGTGGAATGCCCCAGTGATGACCGGCACGATTGGTGGTGGTACTGCTTGGAAGGCTTAAGAGAAAATGCGTTGGTGATTACGGCAAATGTGGCGGGACAGCTTGACCTGTCACTGTACCCTGAAGCCATCAGCTTGCCTCTCTTGGATGGGCTGCTGCATTGGTTTGTTTGTCCAGCCGCTGCCGCACAAGACCCTATGCCCACTGCCACCCCGGGAACCTCACTCTCCCCAAGGCAGCTTGCACTCGAGGCTCTAGCCAAGATGAGCATATTAGAGTCGAACGTAGACATGATCCTTTCGTCGCCTCCATTAACTCGCGTGGAGGAGTTGTACACCATGTTGGTTCGTCTTGTCGGCGAGAGGGGCAACCCGGTGACCCGTGAACTTGCGCTCGTACTTCTTTCCAACCTTGCTCAAGGAGAGAATTCCTTTGTGGGTTTCGGAGATACCAAGGCTTGTATTTCAATGTTGTTAGAATTCATCGAGGATGCCGCCTCCAGCATGAATGCGTATTCTTCAGGCAGCGCCCTAGCACAGGCTGGATTCCACTCGGAGAACTTTTGTGGCACTAGTGTGGACATGTTGCGCAGAGCTTCTTCCACGCTTGTGTGTCTGGCACGTATTCGCTCGAATCGAGCGCTGTTTTTGCCGTTCCAGCAGAGAGTCTTGCGCCTCGCGATAATGCGGATCCTGGACCACATGATCACGAGCCAGCTGGCGGAGATTCTCTTTTACTTATCAAGGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2BH40	AT-rich interactive domain-containing protein 1A OS=Mus musculus OX=10090 GN=Arid1a PE=1 SV=1
O14497	AT-rich interactive domain-containing protein 1A OS=Homo sapiens OX=9606 GN=ARID1A PE=1 SV=3
E9Q4N7	AT-rich interactive domain-containing protein 1B OS=Mus musculus OX=10090 GN=Arid1b PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004947 (this species only)
Transcription factor family	ARID · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01388 all species →	ARID	ARID/BRIGHT DNA binding domain	Domain	Interproscan
PF12031 all species →	BAF250_C	SWI/SNF-like complex subunit BAF250/Osa	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001606 all species →	Domain	ARID DNA-binding domain	Interproscan
IPR036431 all species →	Homologous_superfamily	ARID DNA-binding domain superfamily	Interproscan
IPR021906 all species →	Family	SWI/SNF-like complex subunit BAF250/Osa	Interproscan
IPR033388 all species →	Domain	SWI/SNF-like complex subunit BAF250, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12656 all species →	BRG-1 ASSOCIATED FACTOR 250 BAF250	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016514 all species →	Cellular Component	SWI/SNF complex	Interproscan
GO:0031491 all species →	Molecular Function	nucleosome binding	Interproscan
GO:0035060 all species →	Cellular Component	brahma complex	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11653	ARID1; AT-rich interactive domain-containing protein 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of gfas1.m1.2467.m1 across 22 RNA-seq samples of Galaxea fascicularis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

22Samples

21TPM > 0

4Conditions

88.0Max TPM

42.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
coral holosome · Control	7	7	38.46	46.70
coral holosome · 30ic treatment	6	6	46.00	69.95
coral holosome · Prometryn (herbicidess) treatment	5	4	42.80	88.03
coral holosome · Prometryn (herbicidess) and 30ic treatment	4	4	43.64	57.96

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27118488	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	46.70
SRR27118492	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	40.06
SRR27118491	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	39.48
SRR27118485	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	38.44
SRR27118486	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	36.84
SRR27118487	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	35.59
SRR27118480	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	32.12
SRR27118477	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	69.95
SRR27118476	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	57.91
SRR27118479	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	47.58
SRR27118478	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	44.85
SRR27118466	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	32.74
SRR27118468	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	22.99
SRR27118482	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	88.03
SRR27118483	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	52.48
SRR27118481	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	42.12
SRR27118469	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	31.38
SRR27118484	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	0.00
SRR27118475	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	57.96
SRR27118472	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	51.59
SRR27118490	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	33.56
SRR27118489	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	31.44

Source: CnidoSite RNA-seq expression matrices (GFASC_TPM, StringTie quantification over 22 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.