Gene detail

Detailed information of gfas1.m1.2616.m1 in Galaxea fascicularis

Genomic Location: Sc0000098:72175...86212
NR annotation: XP_020623291.1, catalase-like [Orbicella faveolata]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gfas1.m1.2616.m1

GTTCTCTTTACGCAGTTCACAACAGAGTGCTAGTGACACCAAACGGGAGTGCTAACTAGGCAATCAGACATGTCAAACCGTGCAAAAGCGACAGAGCAGCTGACTGAATTCTCCCAAGGCAAAAAGACACCCGATGTTCTAACAACTGGAAATGGAGCCCCTATTGATACAAAAACATCCACCATGACAGTGGGACCCAGGGGACCTGTCTTGCTACAGGATGTCCAGTTTCTGGATGAGATGAGTCACTTTGATCGAGAACGAATCCCTGAAAGAGTGGTGCACGCCAAAGGAGGTGGAGCATTTGGATACTTTGAGGTTACCCACGATATCCGCAAATACTGCAAGGCTAAGATATTCGACAGAATTGGCAAAAGAACACCTTGTGTTGTACGGTTTTCTACAGTTGGTGGTGAGTCTGGCAGTGCAGACACAGCACGTGATCCTCGTGGTTTTGCTATGAAGTTCTACACTGAAGAAGGAAACTGGGATCTTGTTGGAAACAACACACCAATCTTCTTCATCAGGGATCCTATTCTGTTTCCTAGCTTTATTCACACTCAGAAGAGGAATCCTGTCACTCACTTGAAGGATCCTGATATGTTCTGGGATTTTATCACTCTGCGTCCAGAGACCACTCACCAAGTGTGCTTCCTGTTCAGTGATCGTGGTATTCCTGATGGATATCAACACATGAATGGATATGGAAGTCACACCTTCAAACTGGTGAATGACAAAGGGGTGGCTGTCTATTGCAAATTCCATGTCAAGACTGATCAGGGAGTGAAATGTGTTCCAGTGGACAGAGCTGAACAGTTGGCTGGTTCTGACCCAGACTACAACAACCGAATGCTTTACAATGCCATTGCCAATGGAAAACCTCAATCTTGGACCATGTATATCCAAGTGATGACCTTTGAAGAGGCTGAAAAATTCAGATGGAATCCTTTTGATCTCACAAAGATCTGGCCACATTCTGAGTACCCACTCATCCCTGTTGGCAAGATGGTGCTCAACCGCAACCCAAAGAACTACTTTGCTGAGATAGAGCAGAGTGCCTTCAACCCTGCCAGCATGGTGCCTGGAATTGAACCATCCCCAGATAAGATGCTTCAGCTGCCTGTAAACTGTCCTTACAGGACAAGAGTCACGAACTACCAGAGGGATGGGCCACAGACTTTTGACAACCAAGAGGGTGCCCCTAACTACTTTCCTAACAGTTTCACTGGACCCCTGGATAACTTGAAATACTCACCACAGACAGTCAAGTTGGCTGGTGACGTGGCTCGTTATAAAAGTGCTGATGAGGATAATTTTCCACAGGTCACAACTTTCTGGAGCAAAGTTTTGAGTGAAGCAGAGAGGTCAAGACTGGTAAACAACATTGCTGGTCATCTCAAAGATGCCAAGGAGTTTATCCAAAAACGAGCGGTGCATAACTTCAGCCGAGTTTCTCCGGAGTTTGGTCGCAGATTGACAGAAGCCTTGGCCAAGTATCACACGTCAAAGGGTGTCAGCGTTCCGGCTAGTCTTTAGGAGATGGCGTGAGGAGAAGAAGGAATCAAAGCATCGTAACCTCTGTTATCACAGAATTGTTGTTGTTGCGTGTCCCCCAAGCCGATTCCCAAGCTTTAAGTGATTGTATGAAATGGTGTTTAGCGAAGACCATGAATTTAATAGTTTTTAAAGAAGCGTAACAGCCGATGCAGACAATGAAGGAGGGTTCATGAGCAATTTTGGGTTCAATTGCATTAAACACATACAGCAAATTAATTAAAAGGCGATGGTAGATGTCCTTTGAATGCTTATGTATAAGTATAGTATGCCGGTTTGTCTGAAAATTTTTCATGTTGATCTTGGTCTGAACGGTGTTTTTTCATGCTACTGTATTTTTTTTTCTGTATCTGTGATCGAATTTGAGCCGTCATTATCATCTTCGAATGAACCAATAAACTGGGACTTGTGTAACTTATAACATTAGCGCATGCTCTAGCGAAAGTCAGATGTTCTGCTCATAGAATGGTGTATTAGGGAGTTTTAGCAACTAGGACGGCAACGGCAACAAGAACGCCACAAAACAATAGGCTTAATGAGCTAAAACAATCACTTTGCACGTGCGTTTTACGGTTTTGCACATTTCTTTACCGTCCTATTCAAAACAACAACATAAAATGACCAAATTTTATGTTTTCTCGAGAAGGTGAGCGCATGACGGCAAAGTTTTCTTTCTTTTTTCTTGCATTAACACCGTTCGTAGTAATTTAGTTCCTGGACAGTTCGTCAGCATTTTCCAAGTTAAACAAATTTCAATAATTGCGAAAGCGTCACAAAAACGAGAAGTTATATTTTGAAGTGATGTTTTCGCTGCCGTCTTATGGTTCATGCGTCCCTGCTTCCCCGCTATTTCCTAATCTCGTACCAATTCTGTCTGCGGTGGTGCGAGATTAGCCATTTTCATGAAATGCTAGGCTACAATAGATCGAGACAAGAGAACGTTAAACACTCGTCTGGCTACGTATTGTTTTAACCTCTTCAGAGCATCTTGATTCATTAAAAGAATTTCGAGTGATAGCAATAAATTTTGTCTCAGTCGCGAAGTCGCGAAAACAGCATACGTGCAATGTTGGCGGAATACACTGCGTGTTTAGTGTCGAGAGAAATAGACGAACAAAAGATTTAAAAGGATCCGGTGAAATCTTGCATTCTGGGATCGAATATTTTTGCCAGTCGTCCTCGCAGACTCCACTCATCGAATAAGTTAATTCACCACTCATTATGCCACTGTGAATTTTTTCGTGGTATGGCCTGGTTTCATCCCTAAAGCCGCTCCATATGTTTTACAACTTTTATTTTCCCCATCTTGAATAAATACGTTGTGTTGTGTTGTGTTGTGTTATGTCTTGAATCTCTTCCCAATTCACGTCCAAACTGTTTCTCTATCATTCTTCACCCTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P17336	Catalase OS=Drosophila melanogaster OX=7227 GN=Cat PE=1 SV=2
O62839	Catalase OS=Sus scrofa OX=9823 GN=CAT PE=1 SV=4
P24270	Catalase OS=Mus musculus OX=10090 GN=Cat PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002414 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06628 all species →	Catalase-rel	Catalase-related immune-responsive	Family	Interproscan
PF00199 all species →	Catalase	Catalase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018028 all species →	Family	Catalase, mono-functional, haem-containing	Interproscan
IPR040333 all species →	Family	Catalase, clade 3	Interproscan
IPR020835 all species →	Homologous_superfamily	Catalase superfamily	Interproscan
IPR010582 all species →	Domain	Catalase immune-responsive domain	Interproscan
IPR011614 all species →	Domain	Catalase core domain	Interproscan
IPR024708 all species →	Active_site	Catalase active site	Interproscan
IPR024711 all species →	Family	Catalase, mono-functional, haem-containing, clades 1 and 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11465 all species →	CATALASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004096 all species →	Molecular Function	catalase activity	Interproscan
GO:0006979 all species →	Biological Process	response to oxidative stress	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0042744 all species →	Biological Process	hydrogen peroxide catabolic process	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0042542 all species →	Biological Process	response to hydrogen peroxide	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03781	katE, CAT, catB, srpA; catalase	EC:1.11.1.6	Pathways of neurodegeneration - multiple diseases	ko05022	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.