Detailed information of gfas1.m1.3051.m1 in Galaxea fascicularis

Genomic Location: Sc0000124:188932...199307
NR annotation: XP_020608399.1, H/ACA ribonucleoprotein complex subunit 4-like [Orbicella faveolata]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9ESX5H/ACA ribonucleoprotein complex subunit DKC1 OS=Mus musculus OX=10090 GN=Dkc1 PE=1 SV=4
Q5ZJH9H/ACA ribonucleoprotein complex subunit DKC1 OS=Gallus gallus OX=9031 GN=DKC1 PE=2 SV=1
O60832H/ACA ribonucleoprotein complex subunit DKC1 OS=Homo sapiens OX=9606 GN=DKC1 PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01509TruB_NTruB family pseudouridylate synthase (N terminal domain)FamilyInterproscan
PF16198TruB_C_2tRNA pseudouridylate synthase B C-terminal domainFamilyInterproscan
PF01472PUAPUA domainFamilyInterproscan
PF08068DKCLDDKCLD (NUC011) domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015947Homologous_superfamilyPUA-like superfamilyInterproscan
IPR004802FamilytRNA pseudouridine synthase B familyInterproscan
IPR036974Homologous_superfamilyPUA domain superfamilyInterproscan
IPR002478DomainPUA domainInterproscan
IPR002501DomainPseudouridine synthase II, N-terminalInterproscan
IPR032819DomaintRNA pseudouridylate synthase B, C-terminalInterproscan
IPR012960DomainDyskerin-likeInterproscan
IPR020103Homologous_superfamilyPseudouridine synthase, catalytic domain superfamilyInterproscan
IPR004521DomainUncharacterised domain CHP00451Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23127CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000495Biological Processbox H/ACA sno(s)RNA 3'-end processingInterproscan
GO:0006396Biological ProcessRNA processingInterproscan
GO:0009982Molecular Functionpseudouridine synthase activityInterproscan
GO:0031118Biological ProcessrRNA pseudouridine synthesisInterproscan
GO:0031120Biological ProcesssnRNA pseudouridine synthesisInterproscan
GO:0031429Cellular Componentbox H/ACA snoRNP complexInterproscan
GO:1990481Biological ProcessmRNA pseudouridine synthesisInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0001522Biological Processpseudouridine synthesisInterproscan
GO:0009451Biological ProcessRNA modificationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11131DKC1, NOLA4, CBF5; H/ACA ribonucleoprotein complex subunit 4EC:5.4.99.-
DNA replication proteinsko03032deepkoala

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