Gene detail

Detailed information of gfas1.m1.3117.m1 in Galaxea fascicularis

Genomic Location: Sc0000128:28975...35071
NR annotation: XP_029211734.2, heat shock protein HSP 90-alpha-like [Acropora millepora]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gfas1.m1.3117.m1

GAATGTTCCATGGATTGGGCAATATAAAGGACGCGAATAGCATGTGCTTTCCCTTGACAAATTTTCACAACCGCTCGAGAGCAAAAGCTTTGTGACTTCCCTCGCTGGGATAAGAACGTAAATTTCAACCTTTTTCGCAGAAATGCCTGACATCGAAGAAGTGCAGCAAATGGAACAGGAGGTGGAAGAGGACTCCGAAGCGGAAACCTTCGCTTTTCAAGCCGAGATCGCCCAGTTGATGAGCCTGATCATCAACACCTTCTACTCCAATAAGGAAATTTTCTTGCGAGAACTGATCTCAAACTCGTCGGATGCGCTCGACAAGATTCGTTATGAGGGTTTGACCGACCCAACCAAACTGGACAGCTGCAAGGACTTGAAAATTGAGATCATTCCAAATAAAGATGACAACACTCTGACAATTGTGGATACTGGAATTGGCATGACCAAGGCAGACCTTGTGAACAACTTGGGTACCATTGCTAAGAGTGGAACTAAGGCATTTATGGAAGCCTTACAGTCAGGTGCTGACATATCCATGATAGGTCAGTTCGGTGTGGGGTTCTACTCTGCATACCTGGTTGCGGACAAGGTTGAAGTTTACACCAAACACAATGACGATGAACAGTACCTCTGGGAATCTGCGGCAGGAGGCTCCTTCACCGTCCGCCGTCTTACAGAAGATGTTCTCTCAAGAGGAACAAAGATTGTCCTTCATCTCAAAGAAGACCAGATGGAGTACTTGGAAGAAAAGAGGGTAAAAGAGATTGTGAAGAAGCACAGTCAGTTCATTGGATATCCCATTTCATTGATGGTACAAAAGGAGCGAGACAAGGAGGTCAGTGACGATGAAGAGGAAGAAGAGGAGGAGAAGAAAAAAGAAGATGAAGATGAAGACAAGGAAAAAACTAAGATTGAGGACACCATCAAGGAAATTCTGGACAAGAAAGTTGAAAAAGTTGTGGTATCATCCCGCTTGGTGGCATCCCCTTGTTGTATCGTGACCAGTCAGTTTGGATGGACTGCCAACATGGAGAGGATCATGAAGGCCCAGGCCCTGCGTGATAACAGCACACTTGGATACATGGCAGCAAAAAAGCACCTTGAGGTGAACCCTGATCACTCGATTGTGGAGACCCTGAGGGAGAAGGTGGAAGCTGACAAGAATGATAAGTCTGTGAAAGATCTTGTGATGCTGTTGTATGAAACTTCTCTTCTGTCCTCTGGTTTCACCTTGGATGATCCTCAGGTTCATGCAGGTCGTATCTATAGGATGATCAGCTTGGGACTTGGAATCGATGAGGATATGGATGCTGGTGAAGGGGCAGCAGCTGAGGCAACTACAGATGATATGCCACCACTAGAAGGAGAAGAAGGAGATGACTCATCAAAGATGGAAGAAGTCGATTAATCTGCTCCATTTTTAGCTTTCAAGAGAATGTCAAGTTGACCAGAATGACCAGCAATCAACATAGTATAATGCATGTGTTCAGTTTCAAAGTTGCATAGTACAGTGTCGTTTTTGTTGAAGAGAAAAGAATGAAAAACCATTGCTTGAAGATGAGTTAAAGGACTTGTGAACTGGTGCCACGGAGTTATTCAGCTTTGCTTCCATAAAGGACTGGGCCATACTAATCAATATTCTGCTGGAATTTAACATTTGCCCACAAAACCACAAAAAAGACCTCAGTGGAAAGATTGATTGTATACCATGTTGTGTTCAAAAGCATTGATATGGTGTGACCTTGTCCTTTTATTGTTATTTGCTGCAAGTTTAGTTATCATTGCATCAACGTATTAATAAACGGTGTTGAGATGATTACTTGTGGTGCATTTCTATTCTCTCGATAACTGCCTGAAATGTTCCTTAGTTATTCATTAACATTTTATGATTTATTCTTGTAATTTATTGATGTTGTGATTCTGACCAGCTTTGTCCCTGAATGACTTGGATCAGGCTACCATAGTAATTGACATTACACAGTTAAATAATCTCCAGAATGGACAAAAAACGTACTGCAGTTGGTGCAATTAATTGTGAACATTTCAAAGTTAATATCCTGAAAATTTCATGGATTCGATGAGGTGGCCTTAGCACTCCCATGCAACTTCCAGTAAATTGGTTGAAATCACCATGAAGAATTGTTGTCATGGAAATATTAAATTTACTTTACAAGAAAATTAATCAGTTAACTTAAGGGATTCCATGTTAAATTTCATGCAAATAACTTATGTTGGGTTTTTAAGTGAATAAATTTAACATGGATTCATGAGTCGGGTGATTAATTTTTCTTGATTTGCATAGCTTTGCAAGCCAAGTTCTTTTGTGCAAATATTGCAGCTTTCAGAGAGTGCTCAAAACCAATTTCAAATCAACTGTCATGCTGTCAAGAACCAGCAAATAGGAATCAAGCCAAATACAAAACTTTGTTTGAATATCATATACAAACCCTCCTTCCTTGTTTGGATGCCTTAAATGATATTTTTATGGTAAATTGTTAAACAAAATCTGCTGGGTGCTTTTATTAAAGTCTTGTTAGCCCTGAAGCTTATTACTGGTATTAAATTGCTCAAAATAATAGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P30946	Heat shock protein HSP 90-alpha OS=Oryctolagus cuniculus OX=9986 GN=HSP90AA1 PE=1 SV=2
P11501	Heat shock protein HSP 90-alpha OS=Gallus gallus OX=9031 GN=HSP90AA1 PE=3 SV=3
P07900	Heat shock protein HSP 90-alpha OS=Homo sapiens OX=9606 GN=HSP90AA1 PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001833 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13589 all species →	HATPase_c_3	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Domain	Interproscan
PF00183 all species →	HSP90	Hsp90 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020575 all species →	Domain	Heat shock protein Hsp90, N-terminal	Interproscan
IPR003594 all species →	Domain	Histidine kinase/HSP90-like ATPase	Interproscan
IPR019805 all species →	Conserved_site	Heat shock protein Hsp90, conserved site	Interproscan
IPR037196 all species →	Homologous_superfamily	HSP90, C-terminal domain	Interproscan
IPR036890 all species →	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR001404 all species →	Family	Heat shock protein Hsp90 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11528 all species →	HEAT SHOCK PROTEIN 90 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0032991 all species →	Cellular Component	protein-containing complex	Interproscan
GO:0034605 all species →	Biological Process	cellular response to heat	Interproscan
GO:0048471 all species →	Cellular Component	perinuclear region of cytoplasm	Interproscan
GO:0050821 all species →	Biological Process	protein stabilization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gfas1.m1.3117.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.