Gene detail

Detailed information of gfas1.m1.3119.m1 in Galaxea fascicularis

Genomic Location: Sc0000128:35928...42778
NR annotation: XP_020618223.1, RNA-binding protein Nova-1-like isoform X2 [Orbicella faveolata]
Species abbreviation GFASC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gfas1.m1.3119.m1

GAAGATTGGCTATTGTTCTAATATAGTGGAATATTTTCGTTTCTGTTAATAAAAAAAACACAGGTGGCCATCTTTAAATGGGTTTTTGTCTGTGGCTGCCAGGTTCCAGTGTTTTGTCCCGCGGTACTCAACTTGAGGTCAAGCATTCATTTAGCCCGTCAGACAGTAAAGTTTGAATCGAGATTTCATCCAAGTAGTACTGCCAGAGAATTTCATGAATTTATAGATCTTCACCCTACACTTCAAAGATGTATAATGGTTGGGGCTGGAAAGCTGCTAAAACACCCATCGTGAAAGTTCTTATTCCAAACCATGCTGCTGGTTCAATTATTGGAAAAGGAGGAGCAAACATTGCTGAAGTGCAGCAGTCTACTGGAGCTCGGATTAAGCTGTCTCCAAACAACGATTACTACCCTGGAACGCAGGAAAGAGTTGGTCTTATTATGGGAGAGGTAGAAACTATTAACAAAATGTTAAATTTTGTGATAGAAAAGATCAGGCAAGAACCACCGGCAATGAGATTAAATCCAGCCATGACATACGATCGTGAACGGGCCAAGCAGATGAAAATTGTTGTACCCAACTCTACGGCAGGGCTGATTATTGGTAAGAGTGGTGCAACCATCAAATGCATTGGAGACCAAACTGGGGCTAGAATACAAGTTAGTCAGAAAAATGCAGAGACTGTTCCAGGAGAGAGGGTAATTGGTATCACAGGCAGCTTGGAGCAAGTACAGGCGGCTTGTGCTGTTATAGCGGCAAAGGTGCAGGAGGATCCGGAGCACGCATTAAACAACAACATCTCTTACTCTAGTCTTTCTGGAAATGCTCACAGACTTTCAAATGGCAGCTCAAGTTTGAGCTTTAGTGGTGGGGGGTTATCTGGTGCGGGTCTTGGTGGACTAGGCTTCCCCAACTCAGGAAGTGCCAGTAGCAATGCAGCTACTAGTAACATACTAGCACATGCTGCCTTACTCAGTGGGGGTGGGTTGGGGGCAAATAATCCTTTACTCAATGCCATGGGTAATCTAGGACCTTTAGGGTTGTCATCATCAAGTTCACAGATTACTTCTACCGCTACTGTGGAACTTACTGTACCTGACGAGCTGATTGGTGCAGTCCTTGGCAAACAGGGCAAGACCATCAATGAGTTCATGCAATACAGCGGAGCCAAGATACAGGTATCGCAGAAGGGCGAGTATGTTCCTGGTACAAATAACAGGAAAGTTGTTATCACCGGAGATTTGAACTGTGCTCAAACTGCCCACTTTCTGATTACTCAACGCCTTCAGCAAGTGGAAGCAGAGAGGCTTTTAGGGCATCACTCGTAGAGAACACAAGTCAATCATCTACCATTTCCCCACCTACAGTATTAGCTCATGGCATGCTGCTGTGCTGTTTTTTTCGGTTTACATGTATGTCTTATTAAATTGTCTTTATGATCTCACTGTATATGCAATGCTACTGAAATTCTCCAGCTGATGTGAATTACACATGTGACAAAAAGTGAAAAGCCAATTTTTTTTTCCTTGGTAAATTGAATTGTGACTCAGGAACAAAATCACGATGCAATAATATTGACAATTCCAGATTCTAAAGGTGTCCACTTTGCTGGTAGTGTTGGTGAATATGGAACAATGATCTTGGTGGGCAAATATATGTAGTCACTAAGATATTAGTAGTAGATTGAAAGTATTTTCACTTATGAATAAGATCACTTTGTTTCACTGTATTTTAATCATTTGTTATGAATATTTATTAGGAATATGTCATAGCAAAATATTTTCAATGTCAATTTTTCCTTTGTTTTTGCTTGTATCATATGCTCTGTACAGTAGATAACTCTGAATTTTAGCAGAGGTATAAAACTGAAACCGTGCTTTTGACTTGAAAGTGTAGTATACATCTTGCAGTTGCTTTATTCATGTAGAAATCATTGCCAGGATAATAATAATTTCTATATGTGCAGTTTGTCATTGGCCAAAACAGAACCATCACTGTAATTCTTCTTCTATCAATGATTCGTTAAGGCACTCATTTGAAAGTCATTGTGTAAAATACAGTGATTATTTCAGCTGTCATAGATTTGACGTGAGTGTGATTTAATTTTTTAGGACTAAACTTTTGCCTTATTGGATGTGAAAGTAATCAAAAGAGGTGATCCAACCTCTTCAGCATGTTTGTCCACTTTTGGTGTATTTGATTCATTCCCAATTCATATCTCGTTCTTAAAATTTGTGTTTTTTAACAAAGGTGTTGTGATGCTATTGTGGTTGAAATTTGTTTTTGGCTTGAAGATTTTCTAGCATTGAATTCTGTTTTCATTTTTCTTTGTTTTGTACTCAGTAGCTTAATGTAACACAAGGGAAAATTGAAATTGCTCTGGTTAGAAAGTTTGTAAACAAAACAAAAAAAACAAATCTATACCACAACATTGCTACAGCTTTGAGATTATTGGCATGTAAATGTTTGTTTGAATATGTTATTTATACACTAGTGAATAGAAGTTTTCTTGCCCTTAAGAATACCATGCAGAGAACACTTTCTGTGGTTTTAGTGGGCGTGATTAAAAGAAACAAGAGAAAATGGTTATTGTATTTAAATCCAATTGATTTGAAATAACTATACCAGTAGGTTTTATTGTGATGCCAATCATCATTGTGAATTCAACTACCAAGTGGAATAAGGCTGGGAGAGGTTTTGTGACAGTGTCCTGTCTCTTATGAGTGAGGTAGCCTGTTGTTGTTTGTTCATGAAACTTTGATTGTAGCTGTGTTGAGCAGGCCAAGTAACAAGGCTTAATGCAAGCAAAAATGCTTGAAAACAGCTTTCAAAGAGTGATAACTGAATTGAATTCATGCTTTGTCAAATTCAAGTTTTGCCAATGTTGTTCTGAGATGGAAAGGCAAAACAGTACCACTTTTGCAACCAGGGATGTTGTGATAGACCTCAACATCTTGTCAGAAAACCTCTCCAGCTTCAAAGTCATCTTGTAATCTAATACATTTCTGGAAGGCTACCCACAACACCTTTACACCTTAATTGTACTATCAGCAAATAAGCAATGTGGGTCATGAGTGTTGCCCAGGGTGGTTAAATCAGAGGAGTTCCAGAAGACAACATCATTTAACTTTTCTTCACAGTATCATCACTTGATCAAACTTGTAGGTCAAGAGAATATCCCCTTCAAATATTCTTAACATGATGATAAATGCGGGAAGGAGAGTTGGGAGAATTTGTATGTTGATGCAAGTGAGTAAAGTGTTATGGTAACTACAAATTTATTAATAGAAGACATAACTGGAATTTTAATAAGAATACCTTTGAATTAATGAATGCCCACTCCACATTTGAAGATATCTGACCGAATTAACTTAAACGCGCTTGCATACTAGGGGACCTTGTCATTTAGCGGCTGCTTAGTTGAGTCATTGTGTTATCAAGCTTTCAGATATTTCCTATTTTAAAAATTCAGTGGTGACTTGTTCATTGTTTGTGTACTTTTTGCATTTTAGCTTAGAATAGCATTAACAGTTACAGTTTTTAGCTGTCTCCATAACTTTGACTTCATTATTTGTAGTTTGTTTATTGTGCCATTCATTTTTTTTGTGTCAGCATTTGTTGCAGAGAGAACATTGACTTGAAACTTCATGTTCAACACAGTAATATATCCATGTGACTCATTTTTCTACCAGTACCTTGCTCATATGTTATGACCAGTACAGTACCATATTGCTGGTGGTGTTTAACATCTTGTGGTCGTTCCTCTTAATAAACTGCTGATACATTCATCAACTGTCTCGTTTCATTCCTTGCATTCTCATAAAAACCATTCATTTGCCAATTTTAACAACTTGGCACATTTGCTTCCTCTACAGTCACAGTTGATCTAACCAAAATCACAGTTACTTGTCTTTCAATCTCCTACCATTCCCAGCTGTTTATTGGTATTGGTGTCTGTCAACTTATCAGTTTCTTATGTCAGCCATTTGTTAGGATTTTTTGAATAACTGAATTATAAACAATTGCTGGCATGACAGGTATCATCTTTCATAACAGCATTCCATCTTCAAAGTTTTCATTCTTCCTTGTCTAAAAGATCATTTAAATTGCATTACCACGTTAGGGGCTAAGGAATTGTGGCTCTTCTGAAAGCCAAGAGTTCCTGGTTCTCCAATAATTTTTTTAGGATTTGTGAAAGTACAAAACAGAAGTACATTTACAAGTGTCAGCTGCAAGGTAGGTTTCTTGCTGTTCTTGCATTTGCGTTTTTTGAATTGAATAAAGAGGAAGAAAACCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2PFW9	RNA-binding protein Nova-1 OS=Macaca fascicularis OX=9541 GN=NOVA1 PE=2 SV=1
Q80WA4	RNA-binding protein Nova-1 (Fragment) OS=Rattus norvegicus OX=10116 GN=Nova1 PE=2 SV=1
A0A1W2P872	RNA-binding protein Nova-2 OS=Mus musculus OX=10090 GN=Nova2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005728 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00013 all species →	KH_1	KH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036612 all species →	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR047274 all species →	Domain	RNA-binding protein Nova-1/2, type I K Homology domain 3	Interproscan
IPR047275 all species →	Domain	RNA-binding protein Nova-1/2, type I K Homology domain 1	Interproscan
IPR004088 all species →	Domain	K Homology domain, type 1	Interproscan
IPR047276 all species →	Domain	RNA-binding protein Nova-1/2, type I K Homology domain 2	Interproscan
IPR004087 all species →	Domain	K Homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10288 all species →	KH DOMAIN CONTAINING RNA BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000381 all species →	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14944	NOVA; RNA-binding protein Nova	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.