Gene detail

Detailed information of gfas1.m1.3184.m1 in Galaxea fascicularis

Genomic Location: Sc0000132:110195...121860
NR annotation: KAJ7333541.1, ATP-binding cassette sub- D member 2 [Desmophyllum pertusum]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gfas1.m1.3184.m1

ATGGCTCCTTTCACGAAGAGATACGCAAAGGTCACGGGAACAGCTGCCCTAGCTGTTGCTAGTATCTTTGTTATAAAGAAATATGGTCCGAATATCGGGCGAAGGGTCCTCAACAAACTTCGAAATAGTCAAGAAAACAATACAGGTTTGAACTTGGAAAATCCTTTGAACTCTATATCAAAGGTTAAACGGAGAACAGCAGCTTTAGATTACGAATTCGTTTGCCAAGCTTGGAAGCTCTTAAAGATCCTTTTTCCTGGTATTTGGACAAAGCAGGTGGGGTTGTTGCTACTTCATTCGCTCTGTCTTGTCATCAGAACATTTTTGTCCATTTACGTGGCAACCCTCGATGGGCGAATAGTTAAGTCGGTTGTTCAGAAGAATGTCTTCACATTCGTGTTGTTACTTGCAAACTGGATCGGCGTGGCTATACCAGCAACTTTCATAAACAGTATGATTCGGTATCTGGAAAGCAAACTGTCCCTTGCTTTTCGCTCCGAACTTTCAAATTATGCCTACGAGAAGTACTTTTCAAGTCAAACTTACTATCGCGTAGGAAACTTGGACGGGAGAATGTCGAACGCAGATGAGTGTCTGACAGAAGACATTCGGATGTTTTGTAGTTCAGTAGCTCACCTTTACTCTCATCTCACAAAACCATGCCTTGATGTGTTCGTCATCTGCTGGACTCTAGATGCGATGGCAAGGAAAAGGGGAACATCGTGGAAACTCCCCGTATCGATAGCAGCCGTAGTGGTTTATCTTACTGCCATGATTTTAAAGAAGTTAAGCCCAAAGTTTGGTAAGATTGTAGCTGAAGAGTCACAAAGAAGAGGACAGCTGAGATTTCTACACTCTAGAGTGGTCACCAATGCTGAAGAGATTGCCTTCTATGGTGGGCACAAAGTTGAACTCCGTCTGCTCAAACAAAGTTTCCAGTCATTAGCCCAACAGATGGAGCTGCTCTTTAGCAAGCGACTGTGGTTCATTATGCTGGAGCAGTTCTTAATGAAGTATGTGTGGAGTGCATCAGGACTAGTCATGGTTGGATCAAGCATTCTGTTAGGAAAAGGCACTGCCACAGAACGACTAGGGATGGTTGATAAAGCTGTGAGTGAAAGAACTGAGCATGTCACAACATCACGCTCACTGATGGTTTCTGCTGCAGATGCCTTGGAGAGAATCATGTCTTCTTACAAAGAGATCATTGAACTAAGTGGCTACACTGCCCGTGTCTCAGAGATGCTGGAGGTCTTCAGAGATGTTCAAAAAGGCAATTGTCAGCGGCAAGCTGCAAACGAATTGAAGGAGAGAAAAGACTCCATTGATGAAGCTGGCCAGCCATCCAGCGTGGGAGCTCATGGAGAGGTTGTTGATCTTAGTCAGATGTTGGGCGGTGAAGTGGTTGATACTGAGGGAAGCATCACACTGAAGGATGTGGCCATAATTACACCATGCGGTGATGTAGTTGTGTCAAGTTTGTCTTTTGAGATGGAGCCAAGGATGCATTTGCTAATAACCGGGCCAAATGGCTGTGGAAAGAGCTCCTTGTTTCGTATTCTTGGCGGATTATGGCCAGTTTATAAGGGCTTTTTGGCAAAACCACCCCCAAGTCACATGTTCTACATACCTCAAAGACCTTACATGCCGATTGGATCTCTGCGAGATCAGGTAATCTACCCCCATACGTTTGAGGATATGCAATCTCATGGCATCTCAGATGAAGATCTGGAGGCTGTTTTGGCTACAGTTCATTTGCAGTATATCGTCAAACGAGAGGGAGGCTGGGATGTAGTAAAGGAGTGGAAGGATGTGTTCTCTGGAGGAGAGAAACAGAGGATGGGGATGGCTCGTCTCTTTTATCACAGACCACAGTTTGCTTTGTTGGATGAGTGCACCAGTGCTGTTAGTATTGATGTTGAAGGCAGTATATTCCAGGCTGCGAAAGATGCCGACATTAAATTAAGTTATGAAGGCTACGTTCTCAGAAAGCACTGA

Transcript

gfas1.m1.3184.m1

GTAAACATGGCCGCTGTGACTGCGGTGATATTCCCACAAGGTAACAGGTGTCGTTGAAATTTCCGATGACATCGGCGTTAAAATGGCTCCTTTCACGAAGAGATACGCAAAGGTCACGGGAACAGCTGCCCTAGCTGTTGCTAGTATCTTTGTTATAAAGAAATATGGTCCGAATATCGGGCGAAGGGTCCTCAACAAACTTCGAAATAGTCAAGAAAACAATACAGGTTTGAACTTGGAAAATCCTTTGAACTCTATATCAAAGGTTAAACGGAGAACAGCAGCTTTAGATTACGAATTCGTTTGCCAAGCTTGGAAGCTCTTAAAGATCCTTTTTCCTGGTATTTGGACAAAGCAGGTGGGGTTGTTGCTACTTCATTCGCTCTGTCTTGTCATCAGAACATTTTTGTCCATTTACGTGGCAACCCTCGATGGGCGAATAGTTAAGTCGGTTGTTCAGAAGAATGTCTTCACATTCGTGTTGTTACTTGCAAACTGGATCGGCGTGGCTATACCAGCAACTTTCATAAACAGTATGATTCGGTATCTGGAAAGCAAACTGTCCCTTGCTTTTCGCTCCGAACTTTCAAATTATGCCTACGAGAAGTACTTTTCAAGTCAAACTTACTATCGCGTAGGAAACTTGGACGGGAGAATGTCGAACGCAGATGAGTGTCTGACAGAAGACATTCGGATGTTTTGTAGTTCAGTAGCTCACCTTTACTCTCATCTCACAAAACCATGCCTTGATGTGTTCGTCATCTGCTGGACTCTAGATGCGATGGCAAGGAAAAGGGGAACATCGTGGAAACTCCCCGTATCGATAGCAGCCGTAGTGGTTTATCTTACTGCCATGATTTTAAAGAAGTTAAGCCCAAAGTTTGGTAAGATTGTAGCTGAAGAGTCACAAAGAAGAGGACAGCTGAGATTTCTACACTCTAGAGTGGTCACCAATGCTGAAGAGATTGCCTTCTATGGTGGGCACAAAGTTGAACTCCGTCTGCTCAAACAAAGTTTCCAGTCATTAGCCCAACAGATGGAGCTGCTCTTTAGCAAGCGACTGTGGTTCATTATGCTGGAGCAGTTCTTAATGAAGTATGTGTGGAGTGCATCAGGACTAGTCATGGTTGGATCAAGCATTCTGTTAGGAAAAGGCACTGCCACAGAACGACTAGGGATGGTTGATAAAGCTGTGAGTGAAAGAACTGAGCATGTCACAACATCACGCTCACTGATGGTTTCTGCTGCAGATGCCTTGGAGAGAATCATGTCTTCTTACAAAGAGATCATTGAACTAAGTGGCTACACTGCCCGTGTCTCAGAGATGCTGGAGGTCTTCAGAGATGTTCAAAAAGGCAATTGTCAGCGGCAAGCTGCAAACGAATTGAAGGAGAGAAAAGACTCCATTGATGAAGCTGGCCAGCCATCCAGCGTGGGAGCTCATGGAGAGGTTGTTGATCTTAGTCAGATGTTGGGCGGTGAAGTGGTTGATACTGAGGGAAGCATCACACTGAAGGATGTGGCCATAATTACACCATGCGGTGATGTAGTTGTGTCAAGTTTGTCTTTTGAGATGGAGCCAAGGATGCATTTGCTAATAACCGGGCCAAATGGCTGTGGAAAGAGCTCCTTGTTTCGTATTCTTGGCGGATTATGGCCAGTTTATAAGGGCTTTTTGGCAAAACCACCCCCAAGTCACATGTTCTACATACCTCAAAGACCTTACATGCCGATTGGATCTCTGCGAGATCAGGTAATCTACCCCCATACGTTTGAGGATATGCAATCTCATGGCATCTCAGATGAAGATCTGGAGGCTGTTTTGGCTACAGTTCATTTGCAGTATATCGTCAAACGAGAGGGAGGCTGGGATGTAGTAAAGGAGTGGAAGGATGTGTTCTCTGGAGGAGAGAAACAGAGGATGGGGATGGCTCGTCTCTTTTATCACAGACCACAGTTTGCTTTGTTGGATGAGTGCACCAGTGCTGTTAGTATTGATGTTGAAGGCAGTATATTCCAGGCTGCGAAAGATGCCGACATTAAATTAAGTTATGAAGGCTACGTTCTCAGAAAGCACTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1RBC8	ATP-binding cassette sub-family D member 1 OS=Danio rerio OX=7955 GN=abcd1 PE=2 SV=1
Q9UBJ2	ATP-binding cassette sub-family D member 2 OS=Homo sapiens OX=9606 GN=ABCD2 PE=1 SV=1
P33897	ATP-binding cassette sub-family D member 1 OS=Homo sapiens OX=9606 GN=ABCD1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001779 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06472 all species →	ABC_membrane_2	ABC transporter transmembrane region 2	Family	Interproscan
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011527 all species →	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR050835 all species →	Family	ATP-binding cassette sub-family D	Interproscan
IPR036640 all species →	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11384 all species →	ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0140359 all species →	Molecular Function	ABC-type transporter activity	Interproscan
GO:0005324 all species →	Molecular Function	long-chain fatty acid transmembrane transporter activity	Interproscan
GO:0005778 all species →	Cellular Component	peroxisomal membrane	Interproscan
GO:0006635 all species →	Biological Process	fatty acid beta-oxidation	Interproscan
GO:0007031 all species →	Biological Process	peroxisome organization	Interproscan
GO:0015910 all species →	Biological Process	long-chain fatty acid import into peroxisome	Interproscan
GO:0042626 all species →	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan
GO:0042760 all species →	Biological Process	very long-chain fatty acid catabolic process	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gfas1.m1.3184.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.