Detailed information of gfas1.m1.3232.m1 in Galaxea fascicularis

Genomic Location: Sc0000135:117225...138520
NR annotation: XP_044176412.1, rootletin-like [Acropora millepora]
Species Galaxea fascicularis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q5TZA2Rootletin OS=Homo sapiens OX=9606 GN=CROCC PE=1 SV=2
Q8CJ40Rootletin OS=Mus musculus OX=10090 GN=Crocc PE=1 SV=2
Q9BV73Centrosome-associated protein CEP250 OS=Homo sapiens OX=9606 GN=CEP250 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002685 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15035
all species →		RootletinCiliary rootlet component, centrosome cohesionFamilyInterproscan

 InterPro
No InterPro signature was detected for gfas1.m1.3232.m1. This gene does have a gene model — the search simply returned no hit.
 PANTHER
PANTHER termDescriptionSource
PTHR23159
all species →		CENTROSOMAL PROTEIN 2Interproscan

 Gene Ontology
No Gene Ontology signature was detected for gfas1.m1.3232.m1. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K16469CROCC; rootletin-Cilium and associated proteinsko03037deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of gfas1.m1.3232.m1 across 22 RNA-seq samples of Galaxea fascicularis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

22Samples
22TPM > 0
4Conditions
109.9Max TPM
75.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
coral holosome · Control 7 7 69.81 109.91
coral holosome · 30ic treatment 6 6 88.18 102.36
coral holosome · Prometryn (herbicidess) treatment 5 5 67.97 95.63
coral holosome · Prometryn (herbicidess) and 30ic treatment 4 4 72.98 84.01

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (GFASC_TPM, StringTie quantification over 22 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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