Gene detail

Detailed information of gfas1.m1.3750.m1 in Galaxea fascicularis

Genomic Location: Sc0000170:187254...200763
NR annotation: CAH3162788.1, unnamed protein product [Porites lobata]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gfas1.m1.3750.m1

Transcript

gfas1.m1.3750.m1

ATGTTAACAGTGTTGTTTTATCCACAGGCCTTGGATTCTTTCTTCTTGGTGTTATCTGATAGTGGAGATGTTTTCTTTGTCTCAGAGAATGTTTATCGTTATCTTGGATATACTCAGACATTTTTGATGCACCAGAATTTCCTCAATTTTGTCCATCATGAAGATGTTGTAGGATTTGAAAAATCTCTTCGTCGGGCAGCAAGAGCGAGGATTATAGATTTAGAAGATGGACAAAGTACCACCTGTGAAGAATTTGAAGTATCAGATGTCATGCTGGTAGACAATCCAGTCATGTCAGCCCTTTCTATTACAGGACCCATGAAAAAGCTGGCAGCATTGTTGGGTCCTATGTCTTGGTCATTTAAATTTGATGGCAACATCAAACCACTGCTGAATGGTAAAATGAAACAGTATGGATTCTTTGCTCTTTGTACGCCTGTAAACCCAGCCAACCCATTCACCAGCACTCCCAAAGAGTTACTACAAATGTACAGCTTTACTACTGATGGAGAAAGCTCTGAAGTGGTGTTTCGGTTGATGAATGGGCGTGGAAATTGGCAGTGGGTCAGAGGAAAGGCTAGAATGTTGTATGACAAAGGCGGCAGTCCCGAAAATGTCGCCACTGATAATGTTCTCTTGAACGATGAACAAGGCCAATACTTTCGACAGATTTCATCTGAAGCGCTTCATGATTGGAGAGCGAGGCAAAAAGGCCTTCCATCGCCACAAACGGATGATGAAAAACCAAGAGAGGAGAACAGTCCGCAATCTGTGCATGCACCCGCTTCAGCAACAAGCGATACCATGGGCTCCTTTGGGCCAGGGGTGGTTTTGACTTCCGATGAGAGCATGTTACAAGACTCGAAGGACATAGAGATTATTGAATACTCCACCCCACCTCTGTCAGTAGAAGAAAGGAAAGCACATGTCTTGCCATCGCTTGGTCACCCAGTGAGTGTTTCAGATTCATGCATGTTTGGCTCACCGCAGCTGAATAAGTCACCAGCGGACGAGAAACCAAATATTCTATCGCATGATGGAATGACTGTCAACTGTAAGATCGAGCATAGGAATGGTGATAGTACTAACGTGAACTCGAGAAGGAATCACACAGCGCACGACCAAATCAATCTCATTAAACAGTTCCTTATGGGCGAAAATAATCAACCTCCTCCAAACTCTTGTCAGCACGGGGAGACAGTACGGGTCGATGGTGGCATTATCTGTGACAGCCCTCCTCCTTGGGCCGATTATCCTGCTGATCCATCGTCGGTCCTTCCGGATTTTAACTTCCATCAAGACAGCAGATCAGGCGTCCCTTGTCCACCCTGTCCACCGGAAAATGGCACACAGCCGTCTCTTCACGTGAATGGATTCGATCACATTCCTGACATCTTACTAGGCCGCGGCAATGGTTTGCAGTGTGGCAGGCATCCACAGGTGGATCCCACCAACCACATCTACCCGTTTCTGCCAGATATGAGTACTCACGCAGATCCACCAGTGTCGAATCCCTATGTAAATGGGGTGCATAATGAGGACATTGGTGATGTGCATGTGGAGTTGGCCATGAATGGCATTAACACAACATTGCAAAGCGGAACTGATCTTCTCCCACCTTATTTGCGGCAAGAGGGAACTGTGATCCATTCTTTGCAACAACGACTCAGTCACAACGGTAATGGCTTTTGTCATTCACAAAAACAAAGTAATTATCAGACAGTGAACAAACCCCCTACCGAAAATCACCTTGGTTACGACTTTATGGGACATCCAAGTGCCACAGATCTACCAAGGCAAGACCCCAGCTTATGGTTTCGATCATCAAATACTTCTCAGTCGAATCAAAACTCACAACTTCCTCAGGTCGATGAGGTGATAAGCATTGATGACCTGACTCCAAGCTTGTTTGCAGATCCTATGGTTCCGTTTGGGAATCCGGAAAACCCCCACAGCAAAGCATACTTCACGGGAGCTATGCCCCCTGCCAATGTATATCCTGCAGGTGGAATGCACCTGAATCAACCTGTCGGACAGTACTTCCAAACTCCTCCAATCTTGCATCAGAAACGAGACAACGAGGGTGCAAGCCAGAGTTTTCAGCCAAGCGGCAACAACAGCATTCTCAAAATGATGCTGACTTTGTGAATGTCAAGTTGCTCTTCATTGGTTGTTTAATGATGTCGAGTGTCCTTACCGGTAGTTCTTCTTTTTTCTTTGAAACGGTGGAGCGTTGTGTCACTGTTAGAGTGTTGGTAATTTTCGTGTCTAAGCCTTGAAGAAGTAGAGTAGTTACTCACTGCCTCATGGGTGAACGATCAACTAGTCCTCTACAATAAACGAGCCATGTGTTTGTAAAACACCCAGGAGTTCGTGGAGGAGTGTGTGACTTTGATAGTTCGTTATCATGGTGCACGCTTGTAGCTGGAAACACGGGAAAGACAGGGAGATACACACAGTGAAAACGGCTCGGATTTCCACCAGTCAGTGAGAGCTGATGTATTGTGACCAACTGCCCTGGGAAAGAAAGGTGCTTGTATTAGGTATTGAGAAATACATGGGTTGTGACTGTGCAAGTTCAGACGCTTTCCATACAGAGTGACATTGTAAAATGGACGGCATTAAGAACACGATTAACTGCTTGAAAGGGAAGTGTGCCTTTTGACACGAAGGTAACCGGGTTGCAGAAGTTCAACAGGAGTCCGTTCAAGTTGTTTCCTATCAGCCTGATCGCCAGGAAACTGAAGCTGTTCTTGCGCTAAAAATCGCTTAGTCGGTGTAGTTGCATTAGGTGTATTTTCTCTGGTTGGCAAAGTTGCGATGGCGGAGCTGGGAAGCTGCGAGGAGGCTGGGAACAGAAGAGTTCGCCAAGCCTTTGACTTCACGTGATCAGCACCATGAGTTTTAGAGTAGCCTGTGAAGCAGGGGTTTCCCTTGCGAGGTAGCGGGAGGTGTGAGACGGAATGGAGTAAGAGAAGGGTCAAAACGTAAAAGGAGGGGAGAAGACTGGATTTGCTCCAACTTTCCCCTTATTGTGTTATTTTGTTTCTCTTGCCCCCCGAGCCTTCGGAAAGGAAACGTTTGCCTCGCAGGCGAGCCACAGAGTTTTAAAATAGCTTGTTTCCAGTAAGCTTATAATAAAAAAAATAATAAATAAAAGATGCAGATTATAAAAAAGACTTAGAAGAAAAGTAAGTGAAAGTGAAAACATTAAATCGTTTTAGTGCAGTAAGTGTGTGTAGAATTGTCAACGTCATCATGCATGTAATAACTGGGGGGACTTCTATGTAAAAGTGAAGGGAATATTCTACGAAAGCCACAGCTCATTTCATGGGTGTGGCTTTATTTTCTTTTACTGTTTTGGCTTTTGGCTTTGTCCTAACCGAATTCTTACCAGGCGCCGGTCTATTTTGAGCATTTCCCTCCGTGCGACGGTCTTTACCACCAGCAGATTACGAAGCAAAGGGTATGTTTCAGCTACAACCAGCTGACGATTACATCGGGAGTTCAGTGTCATCGTCATCACCCTACTATCGTTATTGTCTTAAACGTCACAAGGAAGGTGTCGAGGAAAACAAACTGTTGTCAGTTTGTAGTCGTTTTGATCAGGCAAAAACAATTGCTGCAAAGGTTTTCACTTGCAATGAAGAATTCGTAATACTTCCCGCGCAATCCAAATCATCCTGAGCACCGTGGACCTTGCAAGTTTCATTGCATGGTAAAGTAAATTGAAAAAAACAAACTGGAAAACTATTCTCGGGTTTCCATGAAACTACGACTTTTGGCCAAAGTGGCTTGCGTAGAAGGTACGATGAATATTCCCATCACTTCCATTTAAAGAGGGCCTTCTCCACTCATTGTATCTTCGCCAATAAAATGTCGTTTATTATCAATACGCGCGGCCAAATTACAAACTGCTGTCTGTAAAACGCGCGTTTTGGCGGGCGGAACGGGAAATGCCTGGGTTGAAAATGCATTTACCGCCCTGTGAACGGGAAGACTTTCTTTTTTATATATATAAACTGTCTTTTTGCTAATCATTGATATCAATCTTTTTAAAACTAGATTATATTTGACTTTTATCGTAAACAAAAAGGAATTTAATTTGGCTCTTGTTTAGCTGATCATAATGTAGCAACAACTTTCCTTACCATAGTTTCATGCCACATCTCTGTTAAACATTTCTTTCTTATTAAATGAATTTGTATGATTTGGCCTTGTGTATTGATAGTAATGATAGTCGCTTTACAAATAAGCAATATGCCCTCCTAAAGTCATGTGATTGTCCTATACAGATACGTTGTATTAGCCTCTTTAAATTCATTTGTTAGCCGTTGTGTTTCGACTTCTAAACTACAGTCTTGATTATAAAAAGTTTATTATTGTAACTCATAATATATCCTCTCTATATATGATGTAAATAAAGTGATTAATGTTATTTCA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009664 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00989 all species →	PAS	PAS fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035965 all species →	Homologous_superfamily	PAS domain superfamily	Interproscan
IPR000014 all species →	Domain	PAS domain	Interproscan
IPR013767 all species →	Domain	PAS fold	Interproscan
IPR050933 all species →	Family	Circadian Clock Transcription Factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23042 all species →	CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0034751 all species →	Cellular Component	aryl hydrocarbon receptor complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gfas1.m1.3750.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.