Gene detail

Detailed information of gfas1.m1.3903.m1 in Galaxea fascicularis

Genomic Location: Sc0000181:74432...79964
NR annotation: XP_015761494.1, PREDICTED: uncharacterized protein y4nG-like [Acropora digitifera]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gfas1.m1.3903.m1

ATAAGAAGTTTCAGTAGCCAATCAGATTGCGCCAAAAACACAATCACTATGTTCCTCGTGTACTTATGTACATACTCACGCTAACCGTGTACTTCTGTTACCAAAGTCGGATTCATGAGCGAGTCGATCGCAGGGAAGGCAGTAAAGCCAAGCGATCTCGTAACGCAGTGTTCTCTGGTCGAAGCTGTATTGAAAAGTTCATCTCTTGTTCTTTATTTATTGGATATAAGTATTTGTACATAACCAGGAGGCCTAATCTGCAGTCACTCATCGACCTTGCGACAATGGATGCATTCTGTGTAAACGGCATTGAAAGGAATGGATATGCAGCAGACAATTTCATGAATGGAACAGCACACCTAAAAGCCAGGTGCTCTCACGTAACAAATGGCTTTCACACAACAGGCAGTGAGGATGTTCCGTATGCAAATGGCAGCACTAGAGTAGTCCCAGAACGCATATTAGTGACAGGTGGTGCAGGTTACCTTGGCTCAACACTGGTATCTCTGCTGCTTCAACACGGTTATGATGTAGTAGTCTATGACAAATTCTTGTGGGGTGTGGGTCCTCTGCTGCCACATGCAGGTAATCCACATCTGAAAATCATACATGGCGATATCCTGGATAGAAAGCACTTGGCCCATCAAATGTCAGACTGCAACATCATAGTCCATCTGGCTGCCATCGTGGGTTACCCTGCGTGTGAAGCGTTCAAGAAACTAGCAGAGGATGTCAACCTTCAAGGCACCAGAAACGTGGTAGACAACCTCATGCCCAATCAGCAGTTGATTTATGCTTCAACTGGCTCGTGTTATGGAGCAGTGGAAAATGGTTTGTGCACTGAAGAAACACCGATAAATCCACTAACACTGTATGGACGAACCAAAGCAGAAGCTGAGAAAATTGCGCTAGAGGCTGGAGGTGTTGCACTGCGTCTAGCCACTGTTTTTGGTATCTCCCCACGTCTCCGTCTGGACCTCCTGGTGAATGACCTAACATACAAAGCACTTACACTGAAGCACTTTGACCTTTACCAAGGGGGGTTTCGTCGCACTTTCCTACATGTGAGAGATGCAGCCCGCGCCTTCTTCTTTGCACTAGAAAATTACGAGAAGATGAGTGGAGAAGCCTTCAATGTAGGAGATGAAAATATGAATTTTTCAAAGTCTGACATTGCTCAGCTTATTCAAGAAGCAGTTCCAGAGTGCAGAATTACTGAATCAAGCAATGGCGAGGATAAAGATAAACGGGACTACCAGGTTTCCTACAAAAAGATTAAAGAGTTGGGTTTCTCATCCACTATAAGTGTACAAGAGGGTATTCAAGAACTTTTAAAGATTCTGCCACATATAACTCCAGAAGAGGCACAAAAGGCGAGGAATATCTGAATAAGCAATTAACAAGAAACATACTTTCATTCAATCTGAGGTACATAAAGTTTAATTTATGGTAAACAAGGAAGAGTTAGTAATTCAGTGAAATTACAGACAGTGTACGCTACATGTAAACAAAAAAATAAGTATTAAGTTGATATTGTCAATAATTTATCATTGTTTGGCGAGATCCAAGTTGTAAACATTAGTTTTGCTATTCTACATCATGAAGTGCTACAACAGATTTCAAGTGTTAACAGGGATTTCAAATTCCCAGTTGAATTTGCCCAGGTAGACTGGCCACATAAAAGTATTTTTTCCTGGACAGTGTTTCAGACCAAACCAAATGTTTGCAAGACTCAACCAAGATTAAAGTTTCAGAACTTAAATTTTGAATACCAGTAAATAGCATTTATGCACAAAGAGGCTGCGGGTCAAAATAAAATGATTTCCTCCTTATAAAAGGAAGCCCATGTAATTCAAACAATACAACATTTTCCCAGACTTTTAGTTTAATTTCATTAAAACAAAACAGTTTTTTGGCGGAAAACCATATGATAGTTTCTTTTGTAAACGTTTTGATTTTTTAATCATGCATGGTCTTCTTGTGCAAGCAACCTACCGGTATCTTAAATAATTTTAAATATCTTACGTATACAACAAAGAAAGAGAATAACTTTAAGCTGTTAATTTTGAAAACAAATGCAATTTCTTCATGTTGAAACCCGATTATTAATTTAAATGAACAAAGTATGAAATAAGTGGTAATTACAGTTATGATCATAAATGATAGGAGTGTTGAACATTATTATGATGAAGGTGTCTGAAAACATTACAAAGCTAAAATATCCAGGACTGGATCACATGCAATGTAATATTATTTATTGTTATTATTTAAGGGAAGTAGCCCCTCCATTGACAATGTACATCGATTTGTCATCGCCTTTGTTTTTCATTTTTACAAATTGAGGCTAAATTGGAATATATTTGTTCAGATCTTTCAACTAGGAACTGGATGTACAGTCATGTGGCTTGTCAGGCAGTTGTTGTTTGTGCTCAGGTCATATATTTTCAGAGGTGTAAGGGGTATATTTAGAGATTTGAATTTGCTCTTTTAAAGCCTGTGGTATGCACATTTACTGTACTCAAAAGTTTGTGTTGAAAATTCAAAACTAAGTAAGTGGAATAATGGCAGTGGTGAGTGAAGAGAGATGGCGGAGAGCCAAGTGCCCACCAAAATGTTTCATTTAAATAAGTTCAAACTTTTCAATGTTGACCATCACCTTATATAACAGACTGGCACAACCACTGGGATAATTAAACCCAGCATGTTTTTTTCTTATTATTTATAAGTGACTACCAATTAAGTATCCACAGACTCAAAAATACCAGATGAGTACCCAAAGCTGCTAACTGCTAATGTTGCACTGCTTTTATCCTGGAACTTGCTGCTTTTTAGTCTTTTCTCTAAAGACTTTTAACTATCTCGACTACCTTGTACAGCTTGTTTTTAAAAGAGTGAAACTAGGGAATATAATGCTGCTAAATGTGGGCACGGGCATCCCACGTATAAAGAGGGTCCCCTATACTTTTTTTCGTGAAACATGATTGGGACTATTTTTTTCTCGTGAAACGTGATTTAGGTTTTCTTGTTGATTCGTGATTCATGATTGCGATATTTGATTTTATCTTGAACGTGAACGAAGTTTGGGAATTATCCATGACGCGTGAACAGTCTCAATATTTTTACGTGAATGCTTTTTCCAAAGTGGTATAGGGGACCCTCTATAAAGTGAGCTTTCCAATAATGATATTAATTATTAATATTGTCCAATGTGGATGGCCAGAATGTACAGTGTATAACTGCTAAACATTACTTTCAAGGTAGTACCATTAGTTAGCAAACTGGAACATAGTAGAACATTATGTGCATTTCAAATTAATGGCAGGAATTCAAAGCAGTGGTGTACAACAATTCATTTTGAATAAAAATGTTTAACTGGTGGACAAATTCTGGCAAATGGTAAGCATCCCAAGTTAACCAGTATATCTAGAATCAATAGTTATCGATTTATTACAATGTGTGTGCATGAAATACTTTCTAAGTGCTCAAAATATTTGAGCATACAAAATTTCCTTGAAATGTTTTTAGATCCACTTATTTAATAATTAAAATTTGTCAGCTGTCTTGTATTTACTCTTCATTGACACTTTTTTTCGTTTTTCCATTTTGTTTTCTGATCAATGTTTCTCTTCATCACCTGATGTACCAAGTTATTTTTGAGTTACAAATGTTCAAATTCAGAATTTGTGTGAAAACCACTCTGTGAAAGAGTTGTTTGGTACATTATTTATAGTGATGATGCATAGGTTTCAGGAAAACAAAACAAATAAAGCTGATTATGTTGTGTTTTGTTGTTGTGAAGTCCCTGAAGCCTCTGAAGATTTCTGTATTGTGTTCCTCTCCCTTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0P8I7	GDP-D-glycero-alpha-D-manno-heptose dehydrogenase OS=Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168) OX=192222 GN=Cj1427c PE=1 SV=1
D4GU72	Low-salt glycan biosynthesis protein Agl12 OS=Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) OX=309800 GN=agl12 PE=3 SV=1
Q9ZAE8	dTDP-glucose 4,6-dehydratase OS=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) OX=134676 GN=acbB PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003952 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01370 all species →	Epimerase	NAD dependent epimerase/dehydratase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050177 all species →	Family	Bifunctional lipid A modification and metabolic enzymes	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR001509 all species →	Domain	NAD-dependent epimerase/dehydratase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43245 all species →	BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA	Interproscan

Gene Ontology

No Gene Ontology signature was detected for gfas1.m1.3903.m1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gfas1.m1.3903.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.