Gene detail

Detailed information of gfas1.m1.393.m1 in Galaxea fascicularis

Genomic Location: Sc0000006:456664...463352
NR annotation: XP_020624626.1, uncharacterized protein LOC110062108 [Orbicella faveolata]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gfas1.m1.393.m1

ATGGCCCATCACGCACGAAATGACCAAATGTTGTTCAAAGAAGGCACACCTCAAAGTGAAGAGCTCCTTAGACTAGCTCACGACACCTTATCAATCTGGAGAAAACTGGGCATAGCTTTGGGTTTGAACGATTCATATCTGGATGAAATCAATGACGACCAGGCAAAAGAGCTGGACAAATCATACGCCATGTTAAAGAAATGGAGGGAATCATTTGGCTCTAAAGCGACTTATGCACGGCTAGCTGAAGCACTTGATCATGAAGCAATTAAAAAACTTGATCTTATGGAGAGGTATTGTCGTGATCAAGCCGACGAGATGACTCAAAGAATGACAGACCTAACAGTCTCACTCAAAGTCGATGCCGATGGTGTTTCAAAAGATGAAACCCCTGTTAAAGTTCTTCCTTCTATTGAAATTCTCCCTGGTAAACCTTTTCACGTGACACACCGGCGAGAAAAAGAAATACAAAAGATTGAGGATGCTTTAAACCAGCTGCGACCGCAGAACGCTTCAAACCGGATGGTAACAGGGGTTTTAGTGAAAGGTCCCCCTGGATGCGGAAAGACACAACTGGTGAGACAGTTTGGTGAAAAATACATGAAAGAGAAAGCAGGTTGCGAGGTAGAAGCACCGCGAAGGGTTGTCGCAACGCTTCACGCACAAACACCAGAATCAATGTTAAAATCATACAAAGAGCTCCACGAGAAACTAGAAATCCTGAAAGAGTTTGAAGAGAGAGGAAGCTTGCGTGAGCGGATCAAGGCTTACTCAGATAGTGTGAAAAATCATCTCAGTGAAAGTTCCTACGTCTGGCTCTTAATCGTCGATAATCTCACAGTGAACGATCCACTTAAAGAGTTCTGGCCAACGCCCGAAGAAAAAAGCCCGTGGGGAGACGGGGTGGTGCTGATAACAACACAGGACAGTGAGCTTGTGCCCAGATCTCACGCGCATGCCAAAGTTCTGGGGCTGGACTCCGGAATGGAGCAGGACGATGCGATGAAACTGCTGAGTGCTGTTTCTGGAATGGATACCGACGAAGACGCCACAACAGTCGCTCAGTTGCTGGGTTATTACCCGATGTCACTGGCGTGCGCAGCAGTTTATGTCAGGCAAATGCGGGAAGACCGGCCGTTTTCAAACTTCTCCTGGAAGAAATATTTGTCTAATCTCCAAAAGTATTTCGCGTATCTTGATCATTCGGACTACACACATCATAACCCATGCTACCCGCAATCAATGCTTCCAGCAGCGGAGTTCGCCGCCCGAAGGATGGCAGAAACTAACGAGGTCCTCCGAGCAGCGTTCGTATTTCTGTCGTATTGCGCTCTTCAACCAGTACCTTTGGACACGATTGCTGAGTACGTCTTACAGCAGATTGCAGCTTCAGGTGATGAAAGAATCAGAGTACCAGATGACATCAAGCTCAAAATAGCAAGGTGCTCTCTGTTAATTTATCCCGAAACTGGAGAGAGAGGCATAGAAGTTGTGACACTCCATCAGGTCATGCGTTTGGCTTTTACTCAGATCAGACGAAGACCAGCTGAGAAGAAAACTGGAACGCAGGGCGAATTTTCTGGAATCAAAGAGATCCGTGAGGATAAATTAGAACAGAATGGGGTTCTTGAGACCTTAAATGAAGCATACAAGGCTAACAAAGATGAACTTACAAGTGACGCTATAGCCATGAGGATCATTTTAAGTCCACATTTAAAGGAGTTCGTTGAAAGCATAGAGTGGATCCAATCGATTGACATCAAGTTACTTGTACAGACGTTGGTGTACCTTGCAGATAGTCTCGTGCACGTTGCTGGGGCAACAGATACAAATCGTGTGGCACTGCTTGAGCGCGCGTACAAAATAAACAAGAAACTTTGTAGTGAAGAGCTTGTTAGCTCAGCGCTCCTGTGCGACTTGGGATACACATATCGCGAAGCTGGCTTGTTGGATAAAACAATACAAGTTCTGGACGAGGCTGATCGGCTCTGTCAAGCACACAAGGAGCCTGAATGGATAAAGAGAAGATCGCACCTTTTAAACGTCCTGGCGTTTACATTCCGTGAGAGCTTCAAACTGGACCTCGCTAAGGAATATATGAATCTGTCTGTTGAAGTTACCAAGAAGGCTTACGGTGAAAGTCATGTGCAGGTCGTAGAAAGGCTGTGTAATCTCGGAGTGATCTTGCACGACCGGTGGGAAAACGAAGAGGCGATAAAAGTGCTAGAGGAAGCGAGGAATATTGTTGAAACATGTGACACATCCGAGATGGTCATTCGCGCTCAAGTGTTGAACTACACAGCAAAAGTCCATCTACGTTGGTATCTTGGTTTACGGTACACACACCCTCGTGTGTGGAGCACACGCAAGCATCTTGACGAATCGGCTACCCTTCACGCTCAAGCGTTGAAAATTTACATGGACCACCATGGAGATCAGCACAAATTCACTACCGGAGTTATGATGACCTACGGAATGGTCAAACTGCAGTTAGGAGAGCTCGAGCAAGCGTACGAAATGTGCCGAAAAGCTGTCGAGGTGTACCGAAGCTCTGGTCATATTGCGTGGCCGCGAGCGGGTACATTTCTTGCAGACGTCTTCCTCATGCGAGAGGAATATGTTCACGCGAAAAAGTTTTTGGAAGAGATTATTAAGTTTCACGAGGATTTCAACCTGGTTGTGAGCCCCGGAGCGTACCACCCCAAGGCGCTATTGGCTGAGGCTGTCGCTCAGTTGGGGAATGTTGAAACAGCGAAGGACATCTTAACACAATGTCTTGGAGAGTGGGAAGAACAGGGACTGCACCCTGAACACTACTGGGTTGCTCGTACGCGCGCATTCCTCGAAGGACTTAGACCACGCAAGAAAAAGGACGACGATGGCGGATGTGTGCCCGAGCTATAA

Transcript

gfas1.m1.393.m1

TCTGGCGTTGGGCAGATGTAAACCGAAAGTCTGCTTTGAAACAAAGTAGTCTGCGACGGATTTTTTAACCTTTGCAAGGGATCTAGAGGCAACTGCTACTTGACACAAAGATTGGAAAAACATCCGATGGCCCATCACGCACGAAATGACCAAATGTTGTTCAAAGAAGGCACACCTCAAAGTGAAGAGCTCCTTAGACTAGCTCACGACACCTTATCAATCTGGAGAAAACTGGGCATAGCTTTGGGTTTGAACGATTCATATCTGGATGAAATCAATGACGACCAGGCAAAAGAGCTGGACAAATCATACGCCATGTTAAAGAAATGGAGGGAATCATTTGGCTCTAAAGCGACTTATGCACGGCTAGCTGAAGCACTTGATCATGAAGCAATTAAAAAACTTGATCTTATGGAGAGGTATTGTCGTGATCAAGCCGACGAGATGACTCAAAGAATGACAGACCTAACAGTCTCACTCAAAGTCGATGCCGATGGTGTTTCAAAAGATGAAACCCCTGTTAAAGTTCTTCCTTCTATTGAAATTCTCCCTGGTAAACCTTTTCACGTGACACACCGGCGAGAAAAAGAAATACAAAAGATTGAGGATGCTTTAAACCAGCTGCGACCGCAGAACGCTTCAAACCGGATGGTAACAGGGGTTTTAGTGAAAGGTCCCCCTGGATGCGGAAAGACACAACTGGTGAGACAGTTTGGTGAAAAATACATGAAAGAGAAAGCAGGTTGCGAGGTAGAAGCACCGCGAAGGGTTGTCGCAACGCTTCACGCACAAACACCAGAATCAATGTTAAAATCATACAAAGAGCTCCACGAGAAACTAGAAATCCTGAAAGAGTTTGAAGAGAGAGGAAGCTTGCGTGAGCGGATCAAGGCTTACTCAGATAGTGTGAAAAATCATCTCAGTGAAAGTTCCTACGTCTGGCTCTTAATCGTCGATAATCTCACAGTGAACGATCCACTTAAAGAGTTCTGGCCAACGCCCGAAGAAAAAAGCCCGTGGGGAGACGGGGTGGTGCTGATAACAACACAGGACAGTGAGCTTGTGCCCAGATCTCACGCGCATGCCAAAGTTCTGGGGCTGGACTCCGGAATGGAGCAGGACGATGCGATGAAACTGCTGAGTGCTGTTTCTGGAATGGATACCGACGAAGACGCCACAACAGTCGCTCAGTTGCTGGGTTATTACCCGATGTCACTGGCGTGCGCAGCAGTTTATGTCAGGCAAATGCGGGAAGACCGGCCGTTTTCAAACTTCTCCTGGAAGAAATATTTGTCTAATCTCCAAAAGTATTTCGCGTATCTTGATCATTCGGACTACACACATCATAACCCATGCTACCCGCAATCAATGCTTCCAGCAGCGGAGTTCGCCGCCCGAAGGATGGCAGAAACTAACGAGGTCCTCCGAGCAGCGTTCGTATTTCTGTCGTATTGCGCTCTTCAACCAGTACCTTTGGACACGATTGCTGAGTACGTCTTACAGCAGATTGCAGCTTCAGGTGATGAAAGAATCAGAGTACCAGATGACATCAAGCTCAAAATAGCAAGGTGCTCTCTGTTAATTTATCCCGAAACTGGAGAGAGAGGCATAGAAGTTGTGACACTCCATCAGGTCATGCGTTTGGCTTTTACTCAGATCAGACGAAGACCAGCTGAGAAGAAAACTGGAACGCAGGGCGAATTTTCTGGAATCAAAGAGATCCGTGAGGATAAATTAGAACAGAATGGGGTTCTTGAGACCTTAAATGAAGCATACAAGGCTAACAAAGATGAACTTACAAGTGACGCTATAGCCATGAGGATCATTTTAAGTCCACATTTAAAGGAGTTCGTTGAAAGCATAGAGTGGATCCAATCGATTGACATCAAGTTACTTGTACAGACGTTGGTGTACCTTGCAGATAGTCTCGTGCACGTTGCTGGGGCAACAGATACAAATCGTGTGGCACTGCTTGAGCGCGCGTACAAAATAAACAAGAAACTTTGTAGTGAAGAGCTTGTTAGCTCAGCGCTCCTGTGCGACTTGGGATACACATATCGCGAAGCTGGCTTGTTGGATAAAACAATACAAGTTCTGGACGAGGCTGATCGGCTCTGTCAAGCACACAAGGAGCCTGAATGGATAAAGAGAAGATCGCACCTTTTAAACGTCCTGGCGTTTACATTCCGTGAGAGCTTCAAACTGGACCTCGCTAAGGAATATATGAATCTGTCTGTTGAAGTTACCAAGAAGGCTTACGGTGAAAGTCATGTGCAGGTCGTAGAAAGGCTGTGTAATCTCGGAGTGATCTTGCACGACCGGTGGGAAAACGAAGAGGCGATAAAAGTGCTAGAGGAAGCGAGGAATATTGTTGAAACATGTGACACATCCGAGATGGTCATTCGCGCTCAAGTGTTGAACTACACAGCAAAAGTCCATCTACGTTGGTATCTTGGTTTACGGTACACACACCCTCGTGTGTGGAGCACACGCAAGCATCTTGACGAATCGGCTACCCTTCACGCTCAAGCGTTGAAAATTTACATGGACCACCATGGAGATCAGCACAAATTCACTACCGGAGTTATGATGACCTACGGAATGGTCAAACTGCAGTTAGGAGAGCTCGAGCAAGCGTACGAAATGTGCCGAAAAGCTGTCGAGGTGTACCGAAGCTCTGGTCATATTGCGTGGCCGCGAGCGGGTACATTTCTTGCAGACGTCTTCCTCATGCGAGAGGAATATGTTCACGCGAAAAAGTTTTTGGAAGAGATTATTAAGTTTCACGAGGATTTCAACCTGGTTGTGAGCCCCGGAGCGTACCACCCCAAGGCGCTATTGGCTGAGGCTGTCGCTCAGTTGGGGAATGTTGAAACAGCGAAGGACATCTTAACACAATGTCTTGGAGAGTGGGAAGAACAGGGACTGCACCCTGAACACTACTGGGTTGCTCGTACGCGCGCATTCCTCGAAGGACTTAGACCACGCAAGAAAAAGGACGACGATGGCGGATGTGTGCCCGAGCTATAAACTATTAGAAGAAAATTGGTTTTAAATATTTAGTTTATAGAAATATCGGTTTTCTAATGCAGGTGTGCTCTTTCAAAGAACTAATAAGGAGTTCTGAATCGAAATCATCTCGTTTTACAGATGTAAAAGGATTAGATATATTAGATTAGTACAAGTGGTACGAATCCATTCAACATTGTATAAGCCCTTGTCCATCAGGGCAGTATACTTGGGCCACTTCTATTTAGCATATGACTAATGACCTCAGTTCCTTTAGCACCACAGAAGTGCCGAGCGTTCAGACCTATGTAGACGACACTAAGCTAGTTATCCCCTTCAAAATGAAAGATAGTTCGGAAGCCTTTGCGGACTTATGAGATCAGTGACTTGCATAGAATAGGTCAATGGTGTTCCAATAACCTTTTATTGTTGAACCCAAGCAAAACTAAACTTATTGTGTTTGGCAGCAAGCAAATGCATTCTAGATTGGTCACTCCTCGTCTCACCTTGATGGGAAGAGAACTCGTACCTGAACACACCACTAAAGACTTTGGGGTGATCTTGGACACTAAGCCCGGTTCAAAAGACGAACTTTTCATGCGCCGAATCAAAGAATTTAATTCGGCAAATGAGAAGTTCAACGTTTGAATCAATTAAATTCGACGAATTTGATTTGGGTAGACCCAACTATTAAATTTGACCGAGCCGGTGGATAATTATCTTAGATCTTTTATATCAGTATCTGCTTTTAAATTAAATATTAAACGTAAACTGGTAAAGGCCGGATTTTATAGACTCTTAAATATTAGTGTAAATATTTTGTAGGGTCCTTACAGTAGGTTTTTATTGTTGTACTTATTTAAATTTAAGTTATTGTCTCTGAAAAGCCCCTCAGGGGAAAGTCAATAAAGTATGTATGTCTGTAAGTAGAAATAGCCAGGGGTTGTAAAAATAAGAAAAACTAAAACTTTATTTTGGTATGCTATAAAAATATTACACTGAATTGTTATCATTATCAGTATAAACTGAAGAATTTATTTCACTTGTATTCAGATGGAGATCAACTAATATTTAACCCAGTT

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000117 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00531 all species →	Death	Death domain	Domain	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF17874 all species →	TPR_MalT	MalT-like TPR region	Repeat	Interproscan
PF05621 all species →	TniB	Bacterial TniB protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000488 all species →	Domain	Death domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR008868 all species →	Family	Bacterial TniB	Interproscan

PANTHER

No PANTHER signature was detected for gfas1.m1.393.m1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gfas1.m1.393.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.