Gene detail

Detailed information of gfas1.m1.455.m1 in Galaxea fascicularis

Genomic Location: Sc0000008:67123...73629
NR annotation: XP_020603429.1, protein FAM161B-like [Orbicella faveolata]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gfas1.m1.455.m1

ATGGCGTCTGGCCATGGAGCATCCGTTATGAGAAATCTCTGCTATTCTGCGCCCAGACACCCCAGAACAGATAAACCAGCTACTGAAAACGAAAGAACAAGAAGTAGTTTAGAAATTGAACCACCTGAGAGCCAAGGATTGAAACCTGTAGATGATAACAGACCTCCATCTTCTCGCAGACGTAAAAGACACAAGCCCAAACGGTCAGTGAGAGAGTCGTTATCGGACTCTCTTCGCGAATTGGACGATGTTGACGAGGAACATTTTTACGAGCATTTATTAGCCTTGAAAAATGAGCACAAAAAAACTTTAAAAACAGTGGAGAAACTATATTATTCTGAAAAAGAGAAACTTCACTCTGGATTTGAATTGGACTCGAAGACTAAGATAGCTGCGGACGATTTTGATGAAAGTAGAATCCCTGAACAATTCCCATTGGACGTTTTTGATCCTTTTAAAGAAGCGACCGAAGACGAGAAAGAAAATCTTGAAATCCCAGTCAGATCAAAAGACCACATAAAGGACATGTCGGTGAGGGATGACACAAGAACGGAATTCAAGGAAAGTGAAGGAGATTCATCTCTGGACGAACTGCAAGTTTCACGAAGAAGATCTTACAGTGACCCTACTGAAGGAGAGCAATGGAAGGATGAAGAGAACAGTGCAACAAGGAAGCGACCAGGAGACGAAAGAGCTTTGTACAAAGAAATGTTTCCACGAAGGTCCTCTGCTCTGGATGTGGTCGAGGACATGTGGGAAGGCTTATCAGTGTATGATTACCCGTCCGATCCCAGTCCCCCGCGTGAAAAACGCAGCAACAAAAAGGAATGGACACCGACTTTAACTATTCCCAAACCGTTCACCATGACCATTAGAGAAGCTAAGAAAAAGGCGAAAAATACGACAAGATCGCAGCAGATTCTACAAGAGGACTTGAAAAAGAAACAAGAAAAGGAAGAAGCGGAATTGCACAAGAAATTCCGCGCCCAGCCTGTTCCTGCTACGACTTTTTTGCCTCTTTACGATGAGATCACGCGTCGAAATGAACTTAGAAGATACCAAGTGCGAGAACTGAGCAAAGCTATTTTGAAATCTACAGAAAAACCGTTTGAGTTTATGAAACGTGAGGCAGAAAAGAAACAAATCAGGCGAACAAAATCTATGAGTAATATGGCGGAACTCGAGGGCAAGGCGGCAGAGAAACAAAAATTTAAAGCAAAACCGTTTCCTGACCGTTTGTTCGATCTGAGTTTAGCTGACAGGATGGCGGAGAAAGAGGAGTACAGGGCGATTCGGATGCGAATGCGATCACAGGAAATGATGGCCAAGTCTCGCCTTCCACCTAACATGGAATCTAGAGGCGAAGAATATACTCTGGGTGCGTTTCGAAGTAAGTTAAGTAAAGAAGGAAATAGGAATGCCTTTATGACGAAGGAGCACAAGTTTAGGCCGCAGATTAATCCTGATGTACCGGAGTTTGATGAACTTCACAGACAGTTTGAAAAGGAGATGAGAGATAAAAAGAAAGAACTGGAACCCACTGTGGTTGAACCGTTTAATCTGAGAACAGCGCACATCTCCGCTGCGCGAAAATCAAGATGTTCGCAGTCTCAAGAGATAATGGACAGTGGACGGTCATCTCGAGATCGCTCTGCCAGCCGGGAACGACCTGCTAGTGCCAGGCCACACACACCTCATGACACTCTTCCTTTCGGAACCACAGAGTCTGCGCGTCTGCGCGAAAGTTCGGTCCGCAAGAGCCTGGAACAGAGGATCGTGAGTGAACAAGATGAGATTAAGCAGGAGAAGAGAAGACAGCGCCGACAGAAAATACTAAAACCGGAAGTGACGAGAAAAGTGATGGCGAATGATCATAGTGCACAGCTGAAAAAGGCGGCCAACGAAAAAGTTCAAAGTTTCAAGGAAAGTGATAGAGCGCGGAGAGAAGAATACAACCGTGAGCTTCAGGAGATGCAGGAACGCGTAAGCAAACGACCTCTGCTCTTTGAGCAGCAATCCCAGGTCACTGCCAGACGCGCCGCAGAACGCAAATATGCCGATATCCTTCGTAGGGCAGGCGTAGATGAAGCGATTGTGGAAAACCTGGTTACAAAGGATGGTAGGATCGTGGATGCCGAGTCAGACGATGAGCTTGAGGAGACTGGATCACAGGGCGATTATGGTGGATCCAGGCGATCTTCGGGTGCTCCATACGCGCATTGCAACCAGACCGGGACATCTGATGACGGTGGGAGCGAGGTAGAAGAGGAAATCGACGATGAAGGTGGAGAAATATGA

Transcript

gfas1.m1.455.m1

CCTTGAATTGGTTGTCAAGACAAAAGCGGTAGTTACGAACTCTCATTCAATATGGCGTCTGGCCATGGAGCATCCGTTATGAGAAATCTCTGCTATTCTGCGCCCAGACACCCCAGAACAGATAAACCAGCTACTGAAAACGAAAGAACAAGAAGTAGTTTAGAAATTGAACCACCTGAGAGCCAAGGATTGAAACCTGTAGATGATAACAGACCTCCATCTTCTCGCAGACGTAAAAGACACAAGCCCAAACGGTCAGTGAGAGAGTCGTTATCGGACTCTCTTCGCGAATTGGACGATGTTGACGAGGAACATTTTTACGAGCATTTATTAGCCTTGAAAAATGAGCACAAAAAAACTTTAAAAACAGTGGAGAAACTATATTATTCTGAAAAAGAGAAACTTCACTCTGGATTTGAATTGGACTCGAAGACTAAGATAGCTGCGGACGATTTTGATGAAAGTAGAATCCCTGAACAATTCCCATTGGACGTTTTTGATCCTTTTAAAGAAGCGACCGAAGACGAGAAAGAAAATCTTGAAATCCCAGTCAGATCAAAAGACCACATAAAGGACATGTCGGTGAGGGATGACACAAGAACGGAATTCAAGGAAAGTGAAGGAGATTCATCTCTGGACGAACTGCAAGTTTCACGAAGAAGATCTTACAGTGACCCTACTGAAGGAGAGCAATGGAAGGATGAAGAGAACAGTGCAACAAGGAAGCGACCAGGAGACGAAAGAGCTTTGTACAAAGAAATGTTTCCACGAAGGTCCTCTGCTCTGGATGTGGTCGAGGACATGTGGGAAGGCTTATCAGTGTATGATTACCCGTCCGATCCCAGTCCCCCGCGTGAAAAACGCAGCAACAAAAAGGAATGGACACCGACTTTAACTATTCCCAAACCGTTCACCATGACCATTAGAGAAGCTAAGAAAAAGGCGAAAAATACGACAAGATCGCAGCAGATTCTACAAGAGGACTTGAAAAAGAAACAAGAAAAGGAAGAAGCGGAATTGCACAAGAAATTCCGCGCCCAGCCTGTTCCTGCTACGACTTTTTTGCCTCTTTACGATGAGATCACGCGTCGAAATGAACTTAGAAGATACCAAGTGCGAGAACTGAGCAAAGCTATTTTGAAATCTACAGAAAAACCGTTTGAGTTTATGAAACGTGAGGCAGAAAAGAAACAAATCAGGCGAACAAAATCTATGAGTAATATGGCGGAACTCGAGGGCAAGGCGGCAGAGAAACAAAAATTTAAAGCAAAACCGTTTCCTGACCGTTTGTTCGATCTGAGTTTAGCTGACAGGATGGCGGAGAAAGAGGAGTACAGGGCGATTCGGATGCGAATGCGATCACAGGAAATGATGGCCAAGTCTCGCCTTCCACCTAACATGGAATCTAGAGGCGAAGAATATACTCTGGGTGCGTTTCGAAGTAAGTTAAGTAAAGAAGGAAATAGGAATGCCTTTATGACGAAGGAGCACAAGTTTAGGCCGCAGATTAATCCTGATGTACCGGAGTTTGATGAACTTCACAGACAGTTTGAAAAGGAGATGAGAGATAAAAAGAAAGAACTGGAACCCACTGTGGTTGAACCGTTTAATCTGAGAACAGCGCACATCTCCGCTGCGCGAAAATCAAGATGTTCGCAGTCTCAAGAGATAATGGACAGTGGACGGTCATCTCGAGATCGCTCTGCCAGCCGGGAACGACCTGCTAGTGCCAGGCCACACACACCTCATGACACTCTTCCTTTCGGAACCACAGAGTCTGCGCGTCTGCGCGAAAGTTCGGTCCGCAAGAGCCTGGAACAGAGGATCGTGAGTGAACAAGATGAGATTAAGCAGGAGAAGAGAAGACAGCGCCGACAGAAAATACTAAAACCGGAAGTGACGAGAAAAGTGATGGCGAATGATCATAGTGCACAGCTGAAAAAGGCGGCCAACGAAAAAGTTCAAAGTTTCAAGGAAAGTGATAGAGCGCGGAGAGAAGAATACAACCGTGAGCTTCAGGAGATGCAGGAACGCGTAAGCAAACGACCTCTGCTCTTTGAGCAGCAATCCCAGGTCACTGCCAGACGCGCCGCAGAACGCAAATATGCCGATATCCTTCGTAGGGCAGGCGTAGATGAAGCGATTGTGGAAAACCTGGTTACAAAGGATGGTAGGATCGTGGATGCCGAGTCAGACGATGAGCTTGAGGAGACTGGATCACAGGGCGATTATGGTGGATCCAGGCGATCTTCGGGTGCTCCATACGCGCATTGCAACCAGACCGGGACATCTGATGACGGTGGGAGCGAGGTAGAAGAGGAAATCGACGATGAAGGTGGAGAAATATGAAACATTTATTGAGGGAGGGTCGTGTTATCTGCTGAAATTCAACATTAATGGTTTGAAATCGGAAGGCACAAAGAAGATAGGCCGAAGGGTAGCGTTGCGTCATTTAAAAACTGGGGGGGAGGGGGAGGAGGGTAAATACCCCTTTCAGCCCCACCCCCTGCGCGGTTCCCGGCTGAGGTTTCGAAGCTCAAGAACCTACAAACTCCTGAAGATGGCCGAAAGCGGACGCTACATGCCATTCATTCTAACTTCTAAAATTACCATCATTTAACGTTCTAGACACGCTTGCGTATAGCATCCTATGCGATCGCCTTTAAAGACCCATTGTCACTTCCCGTGATGCACTGCGCATTGTTTATTTTGTTTCCAGTTGACACAAATAACGCCGGACAATCTGAAGTTGTAATCACTTTATT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CB59	Protein FAM161B OS=Mus musculus OX=10090 GN=Fam161b PE=1 SV=1
Q96MY7	Protein FAM161B OS=Homo sapiens OX=9606 GN=FAM161B PE=1 SV=2
B0BM24	Protein FAM161A OS=Xenopus tropicalis OX=8364 GN=fam161a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007403 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10595 all species →	FAM161A_B	Protein FAM161A/B	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019579 all species →	Family	Protein FAM161A/B	Interproscan
IPR051655 all species →	Family	FAM161	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21501 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0044782 all species →	Biological Process	cilium organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16772	FAM161A; protein FAM161A	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of gfas1.m1.455.m1 across 22 RNA-seq samples of Galaxea fascicularis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

22Samples

12TPM > 0

4Conditions

11.6Max TPM

4.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
coral holosome · Control	7	3	3.37	9.13
coral holosome · 30ic treatment	6	4	6.74	11.59
coral holosome · Prometryn (herbicidess) treatment	5	2	1.50	5.56
coral holosome · Prometryn (herbicidess) and 30ic treatment	4	3	6.51	9.22

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27118486	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	9.13
SRR27118480	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	8.35
SRR27118487	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	6.11
SRR27118485	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	0.00
SRR27118488	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	0.00
SRR27118491	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	0.00
SRR27118492	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	0.00
SRR27118476	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	11.59
SRR27118478	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	10.71
SRR27118466	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	9.30
SRR27118479	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	8.82
SRR27118468	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	0.00
SRR27118477	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	0.00
SRR27118481	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	5.56
SRR27118469	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	1.94
SRR27118482	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	0.00
SRR27118483	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	0.00
SRR27118484	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	0.00
SRR27118475	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	9.22
SRR27118490	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	9.04
SRR27118472	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	7.79
SRR27118489	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	0.00

Source: CnidoSite RNA-seq expression matrices (GFASC_TPM, StringTie quantification over 22 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.