Gene detail

Detailed information of gfas1.m1.4580.m1 in Galaxea fascicularis

Genomic Location: Sc0000231:12185...16869
NR annotation: XP_029186987.1, group XIIA secretory phospholipase A2-like [Acropora millepora]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gfas1.m1.4580.m1

TTCAGCTGATTGAAGTAATGCAGCATGGAAAAAATGCAAGCAAAGAAAATAATTTAAAACATAAGTAAGCTTATATGAAAAGCGCAATCGTGCGCCGGCGATCAGAATTTTAGTTGCGCATATTAATTATCCATTTGGCATGCGTTTGTTAAGTCCGAATTCAGTTTTCTCCTGAAGCCCGTTGAATCTGCATCAGTCACGGGATAACGTGAATATGATGCATTTACGCTGGAAACTCTCCCTTTTGCTCGTTTTGGGTTGCGCTCTAGAAGTAGTAGCATCTAATGCTGGTGGACTGGCAGATTTGGCTAAAATTTTGGGGCAGTTAGCTGGCGGAGACAATTGTGTTTTTCGATGCCCGAAAGGGTATAAACCTCTTGCTAATCCACAACACAAACCCTCAAGTGATGGCTGTGGTTCCATGGGAATCAAGCTGGATACAACACACTTTGCTGGCTTTACTAAATGCTGTGACCTTCATGACATATGCTACGACACTTGTAACAACGACCGGACCCAGTGTGATGAAGACTTTAAATCTTGTCTCGACAATGAGTGCCTATTAACAGGACTGGGTAATCGACTACCTAAAGAACAACTTGATGCTTGTCAGACTTCAGCAGATCTCCTGTATTCAGGTTCATATGCTTTAGGATGCGTGGCTTACAAAGAAGCACAGAGAAATGCCTGCCTCTGTAATGGTAGAACAATAACAAAGCATGAATTGGAAGAACTTGAAAGAGAGGAAGAATTATAACCAAACGAGACCTTTAGCTGTTAGGGTATACAGCTGTAGTTAGTAAAATAACCGAAGTGAGGGACGAGCGTTCTTGTGACACCTTACTCCTGAAGGGTTTCTGCTTCATTCATTCTGCGTATTACGCAGGTCAAATTTGCGTCTGCGTTGTTCACTTATCTCTGAGCTACACTGTATAACAAAGGCAATCTGAAGAAACAAGGACAAAAAGGAACTAAATATCATTTACACCCTGTAAATTCTGTTTCTTGTTTTATTTTGATTGTGTTTTCTTTTTCATCATATGAACTATGTCAAGTAAACCACAGAACATACACTGTACTCTTAGCCTTGTAGCATTATCTTTCCCCAGACTGTCTTGGCACTTGGCCCCTTACTACAGGTTACCACTAATCAAGTCCCCAGGCTCTTGAGTAACATTGCAGGGAATTTTGGTCTCTGTACACCAAAATCTCTAATTCCAGAGCATTCCTTACTCAACCCACAGAGGGTATCTAAGTTCCAATGGTGGATATACATTAAGTTCTCAATAGCCAGTTGAGCAAAAATCAAGAGAACTGGGGGAGGGAGAGGGATGGAGACAGTCCAAACTGCATGTGTCTATGGGAAGTGTACAGACGTTTTCTCGAACAGTGGAATGAAACTGTCATACAAAGTGGTGTCAGAATTGTTGGGAAGCCAACTTTAAACTCAAGCTTGATACTTCTGTTTGCCAAGTTGTGCCAACATCTTTTATGTCATTATTGTTGCCTGAACGGACTGATACATGATTGTGACATGTGTTTGTCTCAGGAGCTAGCCACTTATGGTGTGAATCTTGAGATGACAGGGAGCCAAACCTTGGCTAGTTATAAGTCCCACGACTTTCTCCGCATAGCCACTTGTCTTTTCAGCTGTTTCTTGAGGGCCACAAGTTTATTAGCTGCATGTAGCTTCTATTACGTGCCACTCTCATTAAATAAAGATGCTTGTTTGTTTGTTTGTTCAGGCACATCCTTCAGTTTAGGTACATGTACATGTATCCCAGGGCCACTGCCACTCTTGCTTAATTCATAACTTGTCCCCTTGAACAATATCTAGCCTTCAGCCTGTTTTATGCCTATCAGTAACTCAGTGAGTATGGCATAGAAGGGTGTTCCAAACTGAGACAATTCCACTTCACAGGCTGCATAAAATCACCTTGGGAATAACTTGAACTGTTGCGAATCCTGTGGCATCACTGAGTATGGATCTAAAAAGCAATATAGTTATTAATAAATAAAATAAGATTTAAGGTCATTCCAAAGAAATACAAGTCACAACAGATTTTATTTGAAACTTTGCTAGGTGGTTGCCAACGTCAAAAACATCAAAGAAATGCAATAAAAAGAGAGGGTCCTCATGTCTGTTTTCATGCTTTGAGGCTATAGTTTATGCAAAATGGCATTCAGGTAACTTGCAATTTTTGTTTTCATACTTTCCTCACACCTGATTATTCTAGATATCACAAAAACTTCATGCAATATATAATAGTGCTGAAATCCCAAGGTTCTAAAGTGCTTTACAGTACTTAATTAAAATCTACACTGTACATGAGGTAAAAATTAAAAATATAGATACATGGATATTTAATCAAAAATGACATTCCTGACCTGCATCCATATTCTTGGTTTTCAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9EPR2	Group XIIA secretory phospholipase A2 OS=Mus musculus OX=10090 GN=Pla2g12a PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008330 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06951 all species →	PLA2G12	Group XII secretory phospholipase A2 precursor (PLA2G12)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036444 all species →	Homologous_superfamily	Phospholipase A2 domain superfamily	Interproscan
IPR010711 all species →	Family	Group XII secretory phospholipase A2 precursor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12824 all species →	GROUP XII SECRETORY PHOSPHOLIPASE A2 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004623 all species →	Molecular Function	phospholipase A2 activity	Interproscan
GO:0006644 all species →	Biological Process	phospholipid metabolic process	Interproscan
GO:0050482 all species →	Biological Process	arachidonate secretion	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0016042 all species →	Biological Process	lipid catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01047	PLA2G, SPLA2; secretory phospholipase A2	EC:3.1.1.4	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of gfas1.m1.4580.m1 across 22 RNA-seq samples of Galaxea fascicularis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

22Samples

14TPM > 0

4Conditions

33.8Max TPM

10.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
coral holosome · Control	7	3	5.84	19.19
coral holosome · 30ic treatment	6	4	12.24	21.46
coral holosome · Prometryn (herbicidess) treatment	5	3	9.17	19.63
coral holosome · Prometryn (herbicidess) and 30ic treatment	4	4	17.45	33.81

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27118480	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	19.19
SRR27118487	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	12.32
SRR27118486	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	9.38
SRR27118485	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	0.00
SRR27118488	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	0.00
SRR27118491	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	0.00
SRR27118492	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	0.00
SRR27118478	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	21.46
SRR27118479	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	21.39
SRR27118476	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	15.46
SRR27118466	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	15.15
SRR27118468	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	0.00
SRR27118477	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	0.00
SRR27118484	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	19.63
SRR27118469	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	14.70
SRR27118481	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	11.51
SRR27118482	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	0.00
SRR27118483	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	0.00
SRR27118489	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	33.81
SRR27118490	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	14.25
SRR27118475	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	12.12
SRR27118472	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	9.63

Source: CnidoSite RNA-seq expression matrices (GFASC_TPM, StringTie quantification over 22 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.