Gene detail

Detailed information of gfas1.m1.4824.m1 in Galaxea fascicularis

Genomic Location: Sc0000251:17242...45573
NR annotation: KAJ7394242.1, Serine/arginine repetitive matrix protein 1 [Desmophyllum pertusum]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gfas1.m1.4824.m1

ATGGCGGACGCTGGGTTTTTTAGGGGCACAAGTGCGGAACAGGACAACCGGTTTCTTGATAAGCAGAAGAAGTTGTTGAAATCCATGCGGTTTGATGATGTTCTCAACAATAAGGTGGACATGGAGAAGGTGAATATGGATGTAATCAAGCCATGGATAACAAAGAAGCTGATTGAAATACTAGGATTTGAAGATGATGTGGTTATGCAGTATGTCTTTAATATGCTGGAATCTGAAAAGACTCCTGATCCCAGATCAATGCAGATAAACATTACCGGTTTCCTGCAAGCGAAGAATGCAAGGGAATTTATGAAAGAGTTGTGGACACTGCTTATAAGTGCTCAAGAAAATATTGGAGGCATTCCTTCATCGTTGTTGGAGAAGAAGAAAGAAGAAATCAAGCAACGAAAGCTGGAACAGGAACGTATTCAAGCAAACTTACAGAAATACCAAGGAGATCAACAGCAAACAGAGCCAGACAGTACAGCCACAGATGACAATGTTACCAATGAAAATGGAGCGGGTGCTGCATCGCATGACATAAGTGAAGAAGTTAAAAAAGCACAAGAAAAGGCACAGTCATTGGCAGGAAAAGAAAGCACTCCTAAGACAGGATCGAAGAAGTCAAGACGAAACTCTAGTCATTCAGACAGTGATTTCAGTGATGATGAGGGAGAGTCTAGAAAAAAGAAAGAATTACACAAAGGTGGGGAGGAAAAGGATGAGAAAAAGGAATCCCCATCTTCGGGAAGAGTGAAAAGGGAAAAAGATGTGGAAGAGATCAAATCTGGGAGCAAGTTCCTGCAGCCAAAATGGAGGTCCCGCCTGTTGTCATCAGCTGCAAAGCCAGCTAGCAGAGATAAAGACGGATGGGATGCTGAGCATAATCAAAACGTTTCACTGACTAATAACCCAGATATAAATGTCGTGTTGGTAGGAGATTCCATCATCAAAGGTCTCAGACGTTATCCCAGGATTTGGAGGAAGTACTTTGCCCCCCTCAAGTCACTGAACTTTGGCATTGGTGGAGACAGAACACAACATGTTTTGTGGCGACTTCAAAATGGAGAAATGGAATGTGATCCCAAAGTGGTTGTGGTGCTCTGTGGCACAAACAATATTGACAAAAACAGCCCCAGTGAAATCACTCAAGGAATACTAGCTATCGTTGATTACATTCGCAAGAAAAAGCCAAATGCTAGCATCATAGTGTGTGGCATTCTCCCTAGGGATTTATTCCCCACCATACGGCGTGAGAATATCGACGAGGTCAATGACGAACTGTTTGAGTACATAAGTTACTCTGAAGAGCTTCGTGACGAGAATGTGTATTTCTTGGCACCAGGTAAAGGTTGGACCACGAGAGGAGGTCAGCTAGATGAATCACTGTACTTCACAGACCACCTGCACTTGGTGGAGGAAGGAGATGAGAAGCTTGCAAAATCAATTTCTCGTTTAGCGAAGGAGCTGCTAAAAGAAGAGGAGAATGAGGACAACCCTGTCCCTCATAAGAAGCTTATCAAGCAAAAGGAGATTGAGGAAACAGAGAAGGCTAAAAAGGAAGAGAACGTTCTAGCTCCCGCTCAAAGTCCAGGTCACGCTCAGCGGGGAGAGACAGAAGACGGTCACGTGACAAAGGACGCAAGCGTAGTAGATCCAAGTCCTCTGCATCACGCTCACGATCCCGGTCATACTCTAAATCCAGGTCACGCAGTCGGGAAAGACGAAGACGTTCTCGGTCGCGCTCGCCCCGTCGGGTTGCTTCGTACAACAGACCTCGCTGGTCACCATTCCGACGCCGTAGGACGCCATCACCAAGAAGGTGGTCGCCGCCAAGAAGAAGATCGCCCCCACGTCGAAGGATCGCCTCCAAAAGAGAAAACAGAGAAAGGAAAAGACAAGGAAAAAGTTCAAGAGAAAGAGAAGGACGCGGACAAGGAAATAAACAAAGAAAAAGAGAAATCAGCTAGTCCCGAGAAGGGTAAGGAAGCGACCTCTCCAGTTCCTCCACCGACGCACCATCGGTCAACTTACAAGAAACAGGAGCATCAGCAGTCTCCGGTCAAACAACCTTCGCCGTCTTCATCATCGCGCTCTCCGTCACCCCAGCCTGCTCCGGTCAAGGAAGAAAAGCAAGAGAAAGTGGAAAAAGAGTCATCGCCGCCATTACCAAAATCCAAGAAAACAACAAGTCGCCGCTACCGGAAGCATTCACCATCGCCATCTTCCTCAGAAGAGGAGTGGTCACCTGAGAGAAAGAAGAAAGCAGACTCTTCAAAAGACCGCAGAAAAGAAAGAGATCGAAGTGAATCTCCTCGGGACAGAAGGAGAAAACCAAGGGATTCCTCACCGTCCCCTCGAAGAAAACCGCGTGATTCCTCGCCCTCCCCTAGAAGGAAGAGAAGGGACGACTCACGCTCTCCTCCCCTCAGACGAAAACGAAGAGAGCCATCGCGGTCACCGTCACCTGTCCGAAGGCGTTATCAAGAAAAACGCTCTCCTCCTCCCCCGAGGCGGCGAAAAAAGTCCGATTATTCCCCTTCACCTCCCCCCAGGGAAAGACGACGGCGCTCGGAACCATCTCCTCAACGCAGCAGAGAGCGCCGAAAGGAGAGAACGTCGCCGTCTCCTCCGCCTCGAAGACGGCATCGGTCAAGCTCGTCTCCTGCCGTTACTCGCCGGGTAGAATCGTCACCACCGGTGGGTCGTCGTCGTGTGGAGAGATCGCGGTCGAAGGATAAAGTACCAAAAGAGCGTCGCCGATCACCAGAACTTGAAAAATTACCTGGAAGGAGGAGGAAGCAGTCTGAGCGATCACGATCTCGGTCGTCGTCTGCTTCGCCTGAGCCCCCTCAGAAGCCACAGGCTGACACTGACACTGTTAAGAAGTCAAAGGCACGTCAAGCAAGACGGTCGACGTCTTCGTCCGCATCCCCTGAGCCTCCACCCGCCAAAAAGAGATCGCGTGAAACTCGAGAATCTCCGAAAAGAAGCCCTGCAAGGGAGGTGACAAAGTGGAAGGGAGAGGGGAGAAGACGGTCACGGTCTGTTTCTCCTGCAGTAGACACACGCGAACGGAAACGAGTGGAACGTAAATCAGCCTCCGTGTCACCTGATAGGCCTAAAAGCCGAAAATCCGCGCAAGCTTCCTCAGATTCACCCGTTCGTAAAACGAAGTCCCGTACAAAACAATCCGCCTCAGCCTCACCCCCACCCCCTAAAGTAGCCAGGTCACGTGGTTCAAAACGTTCGCCATCGGCCACCCCCGAACCCGAAAGTAAAGCGCGATCCCGCCCTACAAAACAATCTCCGCAACCGTCTGCTTCACCTGAAACTCGTCAACAGTCCCACGCGGCCAAGAGAAGCTCTTCGGCATCGCCACCACGTGAGCGGAACAAGCGAAAGGCTGCATCCAAGAGATCTTCAAGCGAAGAGAAGTCTCCAGAGCCCCCGGCTCGAAAGGCCCGCCGGAGCCCATCTGTGCAAGAGGAGGAGGTGCCTAAGAAGTCTCCAAGTAAATCTCCACCAGCTAAGCAGGAAAGCTCTGGCGAGGAGCCGGAGAAAGCGGAAGAAAAGGAAACCAATAAAGAAAAGAAGAAGAAACATAAAAAACACAAGAAACATGGCGCCTCAAAACACAAACACAAGCGCTCAAAACACAAGAAGCGCAAAGAAAAGGACAAGTCGCCGGCGCAGCAATCGGAAAGTATGGAAGAAGACGAAACGGAAACTCTAGAGAGGAAACTCCGCGAGAAGGCTTTGCAGTCTATGCAGAGACATAACAAATCCCCCGAAGCACCACCCGAACAAGATGACGATTGA

Transcript

gfas1.m1.4824.m1

ACCAAGCGACTTTCAACATGGCGGACGCTGGGTTTTTTAGGGGCACAAGTGCGGAACAGGACAACCGGTTTCTTGATAAGCAGAAGAAGTTGTTGAAATCCATGCGGTTTGATGATGTTCTCAACAATAAGGTGGACATGGAGAAGGTGAATATGGATGTAATCAAGCCATGGATAACAAAGAAGCTGATTGAAATACTAGGATTTGAAGATGATGTGGTTATGCAGTATGTCTTTAATATGCTGGAATCTGAAAAGACTCCTGATCCCAGATCAATGCAGATAAACATTACCGGTTTCCTGCAAGCGAAGAATGCAAGGGAATTTATGAAAGAGTTGTGGACACTGCTTATAAGTGCTCAAGAAAATATTGGAGGCATTCCTTCATCGTTGTTGGAGAAGAAGAAAGAAGAAATCAAGCAACGAAAGCTGGAACAGGAACGTATTCAAGCAAACTTACAGAAATACCAAGGAGATCAACAGCAAACAGAGCCAGACAGTACAGCCACAGATGACAATGTTACCAATGAAAATGGAGCGGGTGCTGCATCGCATGACATAAGTGAAGAAGTTAAAAAAGCACAAGAAAAGGCACAGTCATTGGCAGGAAAAGAAAGCACTCCTAAGACAGGATCGAAGAAGTCAAGACGAAACTCTAGTCATTCAGACAGTGATTTCAGTGATGATGAGGGAGAGTCTAGAAAAAAGAAAGAATTACACAAAGGTGGGGAGGAAAAGGATGAGAAAAAGGAATCCCCATCTTCGGGAAGAGTGAAAAGGGAAAAAGATGTGGAAGAGATCAAATCTGGGAGCAAGTTCCTGCAGCCAAAATGGAGGTCCCGCCTGTTGTCATCAGCTGCAAAGCCAGCTAGCAGAGATAAAGACGGATGGGATGCTGAGCATAATCAAAACGTTTCACTGACTAATAACCCAGATATAAATGTCGTGTTGGTAGGAGATTCCATCATCAAAGGTCTCAGACGTTATCCCAGGATTTGGAGGAAGTACTTTGCCCCCCTCAAGTCACTGAACTTTGGCATTGGTGGAGACAGAACACAACATGTTTTGTGGCGACTTCAAAATGGAGAAATGGAATGTGATCCCAAAGTGGTTGTGGTGCTCTGTGGCACAAACAATATTGACAAAAACAGCCCCAGTGAAATCACTCAAGGAATACTAGCTATCGTTGATTACATTCGCAAGAAAAAGCCAAATGCTAGCATCATAGTGTGTGGCATTCTCCCTAGGGATTTATTCCCCACCATACGGCGTGAGAATATCGACGAGGTCAATGACGAACTGTTTGAGTACATAAGTTACTCTGAAGAGCTTCGTGACGAGAATGTGTATTTCTTGGCACCAGGTAAAGGTTGGACCACGAGAGGAGGTCAGCTAGATGAATCACTGTACTTCACAGACCACCTGCACTTGGTGGAGGAAGGAGATGAGAAGCTTGCAAAATCAATTTCTCGTTTAGCGAAGGAGCTGCTAAAAGAAGAGGAGAATGAGGACAACCCTGTCCCTCATAAGAAGCTTATCAAGCAAAAGGAGATTGAGGAAACAGAGAAGGCTAAAAAGGAAGAGAACGTTCTAGCTCCCGCTCAAAGTCCAGGTCACGCTCAGCGGGGAGAGACAGAAGACGGTCACGTGACAAAGGACGCAAGCGTAGTAGATCCAAGTCCTCTGCATCACGCTCACGATCCCGGTCATACTCTAAATCCAGGTCACGCAGTCGGGAAAGACGAAGACGTTCTCGGTCGCGCTCGCCCCGTCGGGTTGCTTCGTACAACAGACCTCGCTGGTCACCATTCCGACGCCGTAGGACGCCATCACCAAGAAGGTGGTCGCCGCCAAGAAGAAGATCGCCCCCACGTCGAAGGATCGCCTCCAAAAGAGAAAACAGAGAAAGGAAAAGACAAGGAAAAAGTTCAAGAGAAAGAGAAGGACGCGGACAAGGAAATAAACAAAGAAAAAGAGAAATCAGCTAGTCCCGAGAAGGGTAAGGAAGCGACCTCTCCAGTTCCTCCACCGACGCACCATCGGTCAACTTACAAGAAACAGGAGCATCAGCAGTCTCCGGTCAAACAACCTTCGCCGTCTTCATCATCGCGCTCTCCGTCACCCCAGCCTGCTCCGGTCAAGGAAGAAAAGCAAGAGAAAGTGGAAAAAGAGTCATCGCCGCCATTACCAAAATCCAAGAAAACAACAAGTCGCCGCTACCGGAAGCATTCACCATCGCCATCTTCCTCAGAAGAGGAGTGGTCACCTGAGAGAAAGAAGAAAGCAGACTCTTCAAAAGACCGCAGAAAAGAAAGAGATCGAAGTGAATCTCCTCGGGACAGAAGGAGAAAACCAAGGGATTCCTCACCGTCCCCTCGAAGAAAACCGCGTGATTCCTCGCCCTCCCCTAGAAGGAAGAGAAGGGACGACTCACGCTCTCCTCCCCTCAGACGAAAACGAAGAGAGCCATCGCGGTCACCGTCACCTGTCCGAAGGCGTTATCAAGAAAAACGCTCTCCTCCTCCCCCGAGGCGGCGAAAAAAGTCCGATTATTCCCCTTCACCTCCCCCCAGGGAAAGACGACGGCGCTCGGAACCATCTCCTCAACGCAGCAGAGAGCGCCGAAAGGAGAGAACGTCGCCGTCTCCTCCGCCTCGAAGACGGCATCGGTCAAGCTCGTCTCCTGCCGTTACTCGCCGGGTAGAATCGTCACCACCGGTGGGTCGTCGTCGTGTGGAGAGATCGCGGTCGAAGGATAAAGTACCAAAAGAGCGTCGCCGATCACCAGAACTTGAAAAATTACCTGGAAGGAGGAGGAAGCAGTCTGAGCGATCACGATCTCGGTCGTCGTCTGCTTCGCCTGAGCCCCCTCAGAAGCCACAGGCTGACACTGACACTGTTAAGAAGTCAAAGGCACGTCAAGCAAGACGGTCGACGTCTTCGTCCGCATCCCCTGAGCCTCCACCCGCCAAAAAGAGATCGCGTGAAACTCGAGAATCTCCGAAAAGAAGCCCTGCAAGGGAGGTGACAAAGTGGAAGGGAGAGGGGAGAAGACGGTCACGGTCTGTTTCTCCTGCAGTAGACACACGCGAACGGAAACGAGTGGAACGTAAATCAGCCTCCGTGTCACCTGATAGGCCTAAAAGCCGAAAATCCGCGCAAGCTTCCTCAGATTCACCCGTTCGTAAAACGAAGTCCCGTACAAAACAATCCGCCTCAGCCTCACCCCCACCCCCTAAAGTAGCCAGGTCACGTGGTTCAAAACGTTCGCCATCGGCCACCCCCGAACCCGAAAGTAAAGCGCGATCCCGCCCTACAAAACAATCTCCGCAACCGTCTGCTTCACCTGAAACTCGTCAACAGTCCCACGCGGCCAAGAGAAGCTCTTCGGCATCGCCACCACGTGAGCGGAACAAGCGAAAGGCTGCATCCAAGAGATCTTCAAGCGAAGAGAAGTCTCCAGAGCCCCCGGCTCGAAAGGCCCGCCGGAGCCCATCTGTGCAAGAGGAGGAGGTGCCTAAGAAGTCTCCAAGTAAATCTCCACCAGCTAAGCAGGAAAGCTCTGGCGAGGAGCCGGAGAAAGCGGAAGAAAAGGAAACCAATAAAGAAAAGAAGAAGAAACATAAAAAACACAAGAAACATGGCGCCTCAAAACACAAACACAAGCGCTCAAAACACAAGAAGCGCAAAGAAAAGGACAAGTCGCCGGCGCAGCAATCGGAAAGTATGGAAGAAGACGAAACGGAAACTCTAGAGAGGAAACTCCGCGAGAAGGCTTTGCAGTCTATGCAGAGACATAACAAATCCCCCGAAGCACCACCCGAACAAGATGACGATTGATTGAAGACAACGCTAACAACTGAACTATCTAAGGCGACGTTGAGTTCAAAACCAGAATTCTGTCGAAAGAAAGTCTGCGCCTTACCTCTCTGTGTTCACTCCGACTCAGTGCCAGCATGCATTGTATAGTGTAGTAATTTTAATTGTGAGTCTGCAAAGTTTGCATCTTTCTCGTAAACTGGTTTTAGAGTCGTGACTCGTCCCCAGGCTACCCTCTTGTTTGAATAGAAAAAGAGCTCACTGGTTAAAAGTTTGATTCCCAAAAGAAGGCTAGCGAGCTCAAATTCCACCGCTATACTGGGTTTCTGTTAAGGATTCAACAGTGTCTGACTGGATTGATTCTGACTTAATCTTTCAAGTGCCCTAAGTGTGAATAGTCCTACATAATCAGTATGAAATTATGGTCATGTTGGTGTTACTTTGAGTGTCACTTTGAGTGTCACGCAAAACCTCCTCGTGACCATCCGCGGATTGTACTACTTTAGAACGCGTTTTTCTATCTTATCGCAGCTCAGTGAAACACTGGCTGCAAAAGATGTATTAGTTTGCAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q52KI8	Serine/arginine repetitive matrix protein 1 OS=Mus musculus OX=10090 GN=Srrm1 PE=1 SV=2
Q8IYB3	Serine/arginine repetitive matrix protein 1 OS=Homo sapiens OX=9606 GN=SRRM1 PE=1 SV=2
Q5R5Q2	Serine/arginine repetitive matrix protein 1 OS=Pongo abelii OX=9601 GN=SRRM1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001370 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01480 all species →	PWI	PWI domain	Family	Interproscan
PF13472 all species →	Lipase_GDSL_2	GDSL-like Lipase/Acylhydrolase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002483 all species →	Domain	PWI domain	Interproscan
IPR052225 all species →	Family	Serine/arginine repetitive matrix	Interproscan
IPR013830 all species →	Domain	SGNH hydrolase-type esterase domain	Interproscan
IPR036483 all species →	Homologous_superfamily	PWI domain superfamily	Interproscan
IPR036514 all species →	Homologous_superfamily	SGNH hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23148 all species →	SERINE/ARGININE REGULATED NUCLEAR MATRIX PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan
GO:0048024 all species →	Biological Process	regulation of mRNA splicing, via spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13171	SRRM1, SRM160; serine/arginine repetitive matrix protein 1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.