Gene detail

Detailed information of gfas1.m1.5294.m1 in Galaxea fascicularis

Genomic Location: Sc0000294:53240...58101
NR annotation: CAH3020505.1, unnamed protein product [Porites evermanni]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gfas1.m1.5294.m1

GTCGGCCCTCAAATGACGTCCGAACTAAAAATACTGATTCCAGTTTCCAGTTTTGATATCCGGCTAAAAACATGCTACTCCTTTTAAGGAAACAAAAGTAACCTTCAGAAATAATTTTGCAGAATCAGCGCGTCTTTTCTCTGAAATTTGCAGTGGATGGAAAATAGTTTATTTTAACAAGCTTGTCTCTGTTATCTGGTCGTGCGATCGATCCTTCGAGGCGGTGCAATAATATATCGCAAGTCTTGGAAGCCATGGCTTTTTCAAATCTCCAAGCAGTGTTCAAGTTAGCTCAAAGACCAGTTCATACGATTAGCAACAGAAAAGGTGAAGAGTTTGAGCTAAAAACCGAAGCAAAAGGTGCTTTGTTGTTTCTGAAGGACTGCACAGATTGCCATGCCAGTTTACTCGAGAAAGCTGCGAAAGTTCTTGTAGAGGACTGCAACAACTTGGTTCTGGACGTCAAAAATTCACTCCTTTCAGGTTTACTTGAACTCGTATCGTGCAAAAAAGTGGTGCTGAATTTACTTGAAGGTGGTCAGATTCCCACTCTAATGGCTGACAGTACCACCGACCTCAACATAAACATATTGCAACACTCGCAGTTTGAATCTCTGTACCTTCACCAGTCAAGCAACATTGAAGTCTGTTTACTTGGTGATGAGCCCACAAAGCATCCAGTATCTTTTCCAGAGGCTGTTCCTGAACACTTTCAGTTTGTAGTTCACTGGGAAAAGGAGGGAGAAACACAAAAGATTGTCTGTGAAAAAGTTGTGAGGGAAGGTGTATTCCCGACTACAGAGCGGAAGCTGAAGGAAAACCAAGAAAGAACAGCAAGAGATTTGGAGAAGATGGCAAGAGCCCTTGTAGACAGCATAAAAATTACACCCAAGGGGAAGCACAAAGCAAAACCAGGTGCCGATGAGGACAGTAATGCAGGTTCTGGTCAAGTAAAACCACCATCAGAGAAACCCAGTGATGGCATCCCAAAACCAATCCCCACCACTGGAAGGAATCATCACAACATTAAAGAGGAAGAAGAGAAAAAGGAGTTCTTTGACAGTGAAGAAGAGCTGGAGAAAAAGATTGATCTTCTCACAAAGTGGGTGAAGGAGAGTAAGCATTGCATCATGTTCACGGGTGCAGGAATAAGCACAAGTACTGGCATCCCTGATTTCCGCAGTGGAATGAACACTGTGCTCAAAACAGGGCCTGGTGTGTGGGAGCTGCAAGCTAAAGGCGCACCTCGCAAACCTGGAGCATCCTTTCTTGCTGACATGTTGAAAGCAATACCATCACCTTCCCATATGGCTATCGTGAAGCTACACAAGGAGGGGCTGGTGAAGTTCACTGTGAGTCAAAATGTAGATGGTCTCCACCTACGTAGTGGTATTCCCAGTCATGAGCTTGCAGAACTTCATGGAAATACCAACCTGGAGAGGTGCACCACCTGTGGTGCTAAGTATTTAAGAGACTTCAATGTTCGCACTGCCAGGTTTGTTTATGACCACCAGACTGGTAGATTCTGTGATAATCCCAACTGCCGTGGCGTGTTGGTGGACTCCATCATAAACTTTGGGGAGACTCTTCCTACTTATGAACTAGAGGAGTCTTATCGGCAAGCCAAGAGGTCTGACTTGATTATTGCACTTGGCTCCAGCCTCCGTGTCAATCCAGCTGCTGATATTCCAGCTGTTGCAGTCCGACGTAAACAGAAATTGGTAATCTGCAATCTGCAAAAGACACCCCTCAGTCCTTACTGCTCTCTGGAGATACACAGTCAGATAGATGCAGTTATGAAAGGGCTTTTGGAGAGGCTTGGTTTGGAGATTCCACCTTTCAGAGTGAGACGTCGCTTTACTGTTGAAACAAGACAAAATAAAATCATGATCCAAGGCCTTGACCTAGTGTGTGACACACCTTATTCCTTCTTCAAACAAGTGTCCATGCGTGTGTCTCAGGACATCAAAGGGAAACGGCAGGTCATTGCTGAGGAAGTGCTTTCAAAGGAGCCAATGGAAATGCATTTTAAGAGCATGCTGGGTATATCAGCAGATAATCCACTGATCACGGATGTAGAGTTGGGTTTCCAAGGTCATTATGGTGAACCAAACTTCTCGTTCAGTGATTCAGTGAAATGTCCTGGGAAGGCTATATTTTGTGTAGAGTATGAACTGTCCACAGGACAGTGGTCGCTGCAGAAGTTCTAACTAAAATTAGTTTGGTCTGAAGATTAAGTTGTTGAATGCTTAGGGTATAACACTGTAATTTATAAGTATTTATGCAGCTCCAAGGCTGGCTACTTGTGATCCAACCCTTGATGAAAAGATATAACATTAATATTTTAATGGCATGGTCTGGATTACAAACTCTTTTGTAATCACAGCCTTTGGTTGAAAAATAAACTCTTTTTAACCCGGCCTTTAAACCTTAAGAGTGATCAGCATCAAATTTCTCCTTACAAGTAATATCAATGCTTTATAAAACAGTGATCATGAGAATTAAAATATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9FE17	NAD-dependent protein deacetylase SRT1 OS=Arabidopsis thaliana OX=3702 GN=SRT1 PE=1 SV=1
Q7XWV4	NAD-dependent protein deacetylase SRT1 OS=Oryza sativa subsp. japonica OX=39947 GN=SRT1 PE=1 SV=2
B8ARK7	NAD-dependent protein deacetylase SRT1 OS=Oryza sativa subsp. indica OX=39946 GN=SRT1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000904 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02146 all species →	SIR2	Sir2 family	Family	Interproscan
PF08603 all species →	CAP_C	Adenylate cyclase associated (CAP) C terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003000 all species →	Family	Sirtuin family	Interproscan
IPR026590 all species →	Domain	Sirtuin family, catalytic core domain	Interproscan
IPR016098 all species →	Homologous_superfamily	Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal	Interproscan
IPR050134 all species →	Family	NAD-dependent sirtuin protein deacylases	Interproscan
IPR036223 all species →	Homologous_superfamily	Adenylate cyclase-associated CAP, C-terminal superfamily	Interproscan
IPR013912 all species →	Domain	Adenylate cyclase-associated CAP, C-terminal	Interproscan
IPR029035 all species →	Homologous_superfamily	DHS-like NAD/FAD-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11085 all species →	NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0070403 all species →	Molecular Function	NAD+ binding	Interproscan
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0007010 all species →	Biological Process	cytoskeleton organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11416	SIRT6, SIR2L6; NAD-dependent protein deacetylase sirtuin 6	EC:2.3.1.286	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of gfas1.m1.5294.m1 across 22 RNA-seq samples of Galaxea fascicularis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

22Samples

17TPM > 0

4Conditions

162.6Max TPM

28.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
coral holosome · Control	7	6	22.60	38.37
coral holosome · 30ic treatment	6	4	19.04	30.41
coral holosome · Prometryn (herbicidess) treatment	5	4	48.21	162.59
coral holosome · Prometryn (herbicidess) and 30ic treatment	4	3	28.39	39.78

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27118485	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	38.37
SRR27118488	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	27.99
SRR27118491	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	27.21
SRR27118486	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	27.19
SRR27118487	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	23.33
SRR27118480	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	14.07
SRR27118492	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	0.00
SRR27118479	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	30.41
SRR27118478	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	29.78
SRR27118476	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	29.16
SRR27118466	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	24.91
SRR27118468	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	0.00
SRR27118477	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	0.00
SRR27118482	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	162.59
SRR27118481	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	31.14
SRR27118484	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	25.27
SRR27118469	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	22.04
SRR27118483	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	0.00
SRR27118475	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	39.78
SRR27118490	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	39.00
SRR27118472	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	34.78
SRR27118489	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	0.00

Source: CnidoSite RNA-seq expression matrices (GFASC_TPM, StringTie quantification over 22 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.