Gene detail

Detailed information of gfas1.m1.5919.m1 in Galaxea fascicularis

Genomic Location: Sc0000352:18402...27259
NR annotation: CAH3022114.1, unnamed protein product [Porites evermanni]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gfas1.m1.5919.m1

ATGTTCAATTATTCTGCTATCTTCCCCTCGGTTGCACAGGTTCCCTATGAGATCCTCAACAAAAAGTTTCGTGCAGCGCAGAAGGTGATTGACAGGGAGGTGTCACTTGTAGTGAGCGCAACAAATGATTTGACCAACAGTCTTGGTACTGTGCCAGTCAAGGTTGGAGAAATCAGTGGCTTTCTTGATGGAGTAGTACAGAAGTTGCAATCCTTGAAAAGAAAATCAGAAGAATGTCTTGTCCAAGAAGAAGCTTGCTTACGGCATTGTCGTGCTCGTCTGGACCACATAAAAGGACATGCAGATGAGCGGAAGAGTGCTGTGATACTGTGGAAAAAGAAACGACTGGATAGAATGTTGGTGGATCACTGCCTTAGGTGTGGCTACTATGAAACTGCCATCAAACTTGCTAGGGAATCTGACATAGAGGAATTTGTGGACATTGAACTGTTTTTGGTGTCAAGGAAAGTAGAGGAATCCCTGTTAAGAAGAGAAATAGGACCTTGTTTGGCTTGGTGTTATGAAAACAAATCAAAGCTGAGAAAACTCAAGAGTAATCTTGAATTCAATGTCAGGATGCAAGAGTTTGTTGAGTTTGTTAGAAGAGGTGACAAAATGGAAGCTGTAAGGTATGCAAGGAAACACTTTCCTCCTGCAAATGTTGATGGAACCATGACCAAGGAAATCCAAAGAGCCATGGCTTTGCTGGCCTTCAAACCTGAGACAAGCTGCTCTCCATACATGGAGTTGTTTGATCTGGAGAGGTGGACTCAGCTAGTGATGCAGTTCAGAAGAGAGAATTTCCAGCTTCATCAGCTCAATGATCAGTCTGCGTTAGCAGTGACACTTCAGGCTGGACTCTCAGCTCTCAAAACACCTCATTGTTACCAAGAAGGACACAGGAGTTCAGAGTGCCCTGTTTGCAGCCATCCACTGAACATCCTGGGCTGTCCCCTGCCATATGCCCACTGTGCCCAGTCCAGGCTGGTGTGTCCCATATCAGGACACGTTATGAATGAGAATAACCCTCCCATGGTGCTACCTAATGGATATGTGTATGGAGAGAATGCATTACACGGTATGGCGAGTGAAAATGAAGGTAGGGTGGTTTGTCCTAAAACTCAAGACTCCTTCCATGTTGACCAAGCTGAGAAAGTATACGTCATGTAGGAACACACAAACCTGTCCACATGGGAGCTGGGGCAGTTACTCAACTTTTAGTCTTTGCCATCATGTTACGTGTTCACACTGGTTGATGACAGTCCGTTCAAATAATAACAAAGAAGAATCGTTTGTGTAGAGTGTGAATCTGAACACACCAAAGAAGAACCATGTTTGAGCCTGCCCAAAACTACTGCCTTGCTGAATCTAGCACTGAGGGAATCTTAAAAAGGCTCATTTCGTGGTTTAAGCACTGGAAAAACCAGAAAATATGTGATGTCTTTTTTTGTCAATGCCGTCGGTACTTTAAGGAATTTTGAAAATGTGGGCACTTCTGCATGTCATTGTTCAGGCAGAGAAAACACATTAATCATGAACGAACACAACAGTGGGGGCTGTCGTAAAATAAGCCTGGGATCCAGGAAGTGCTAATTTGAGACTTACCGCACTTAAGTATATATTATAACTGTGTACAAGTACACCTCTACATGTATATTTTGGTTGTTATGTATTGGGGTGTTCCGCGCTTTTTGTTTGGGTTAAATACGTTGACATCCCTCATTGACAAACGAATTTAAGAGAATTAAATTGTATAAAAGAAAGTGTTTTCCTTATAAGTTTAAATTTAATAAAGTCAGTGGCTCAAATACTTTTTGTTAAAGACGATAGAAGATTTCCTGTACTGTGACATGTCCCTGTTAAGGTTATTACTTAAACTACGTTGTTGTAGATGTTACCTGGTGAAGCAAGTTTTGTCTCACAGGTTTCATGGTAGTTGTTTTTATCTCTTTCACGGGAGCATAATGAACCCACAATTGACTTGCTCCTAACGTCAACCCCCTTGAAGTCCTGATTCTTTTTTTTCGAGGCCTATTTACACAATTGCATAAATTGCGTTCATAACTGCGAGGATCATTCTTCATTTGATTTCTTTTCTTGGCAATCATTCTTGATTATGAAAGGCTGAACAAGTTTCCTTGAAAATTTATCGTTCACAAGTTATTTGCCCTAGTAAACGCATCGCAGACCTCTGCAATATTTCTTTAGTGACCCTAAATACTTTAGTACTGGCAGAATCTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q4VC33	E3 ubiquitin-protein transferase MAEA OS=Mus musculus OX=10090 GN=Maea PE=1 SV=1
Q5RKJ1	E3 ubiquitin-protein transferase MAEA OS=Rattus norvegicus OX=10116 GN=Maea PE=2 SV=2
Q7L5Y9	E3 ubiquitin-protein transferase MAEA OS=Homo sapiens OX=9606 GN=MAEA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007028 (this species only)
Ubiquitin family	E3\|E3 activity RING\|U-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10607 all species →	CTLH	CTLH/CRA C-terminal to LisH motif domain	Domain	Interproscan
PF13445 all species →	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006594 all species →	Conserved_site	LIS1 homology motif	Interproscan
IPR006595 all species →	Domain	CTLH, C-terminal LisH motif	Interproscan
IPR013144 all species →	Domain	CRA domain	Interproscan
IPR045098 all species →	Family	Fyv10 family	Interproscan
IPR024964 all species →	Domain	CTLH/CRA C-terminal to LisH motif domain	Interproscan
IPR027370 all species →	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR044063 all species →	Domain	Gid-type RING finger domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12170 all species →	MACROPHAGE ERYTHROBLAST ATTACHER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0034657 all species →	Cellular Component	GID complex	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18624	MAEA, EMP; macrophage erythroblast attacher	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.