Gene detail

Detailed information of gfas1.m1.6541.m1 in Galaxea fascicularis

Genomic Location: Sc0000418:4732...19197
NR annotation: CAH3042520.1, unnamed protein product [Porites lobata]

Gene Structure

More details in Jbrowse

Sequence

CDS

gfas1.m1.6541.m1

ATGCTGCACCCCAAGAATTTAATTTTTATATTACCTCAAATGGTTAATGTGCCACTGGTATGCTATTTCAGCATCTCGGAAATAGTGACATCATCTCCACCTGGAATGCAACTTTCCTCTTTACGCTACAGTGATGGAGTCTTCTACCAAAATGTCACTTGGTATCCCAGCCAATATCAAGTCGGCCAACAGCTGTTTTGTTTCAAGGCGGTGGATTCGGCAAACATGGAAAGCGAGTACCGATGTGTCACAATTCTCGTGGGACTAAGAAACACACCTCGTGTCGTAATGGGAAGCCAAACGCCAAGGAACCGCGTCAGCAAACTTGGACCAGGTCTAACGTGGTGGAGCATACAGTTCGATCGAGTGATAAAGAAACCCAGAACATCTTCCTTCATCCGGCTTGTCTCGATACCTAGTGGTCACGCCGTTTACAAAGTAGATACTCTTTCCTCGTATGTCAGAATCAGCAGTGATCACACTACCTTGCAGTTCGCAATACCTAATGCAGCTTTGAGCATGAACGGTTCGTACGCTGTTCTGATAGATCAAGGTGCAGTAGTTGGACAAGGATGTTCCTATGACGGACCACCAACACCAGGCATAACATCTTCGAGTTTCGGGCGTTTTGCTACGTATGGCTTTTGCCCTTTCGGGTATTACCTTGAACCTCCAGAATTCACGACCTGTGTCGATATTAACGAGTGCGGTTATCTCTCGAGATCGAAACGCAGTAATAATTATTACTGGTGGAGTTACACATTTAGCTTCTCCCCAACATCCTCAACAACATCAACAGAATCTAGCATATCTGATATGATAAACTTCAGCGTGACAGCCAGTGTGACAACAATCTCAATCAACAACCTAACAACCAAAACGTTTGTGGGTACTGACACAATAGCAAGTTACATAAAAACGTTCATTCAGTTTCATCGGTGGCTATTCCGACTGGATACGTTCGCAACAGCTTCCCATAAGCTCTTCAGCGTTCGGCGTGTCTTAACAGACACATTCACCAGAAATCTCTGCTACACCATGAATACGCCGGGCAGCTACAGCTGTTCATGTGTTACTGGATATCAACTTGCCTCCGATGGAAGATCTTGCACAGACATTAACGAATGCTCGATCAACAATGGTGGTTGCAGTCATTATTGCTACAATATCCCTGGCTCATTTTACTGTGGATGCCCTGAAGGAACAACTATGGCTGAGAACAATTTGACTTGCTTTCAGCCTGGTATGAGTGTTACATGTGGCCATGGTGAAAACAACATGACTGTTTCATTAGACAAGCAAACATTCCCATTCTTTACTGTCAAGAATCTACATCTGCGATATTCTTCGTGCAGGGCCACACAGAATTCCACTCACTTAATCATTAGTACTCCGTTAAATGGCTGTGGAACACAAGTCAACGAAACACAGGATGATTTAATATTCTGGAATGAAATTCAAGTGGATGCGGTGGTCATCGATTTTGTCATCACTAGAACGCACGACATCAATATTCCATTTTACTGCAGCTATTCAAGAAGGGACAGGATAACAATGGCCTTTACTCCTGGGAATGTTTACTTCGGATTTGACAAGAAGTATGGAAATTTCACCTTTCGAATGGACTTCTACAAAAGTGCGTCATTTGCCACACCCTATTCTGAATACCCCATACCAGTGGCTCTCAACGACTATGTATATGTGAAGTACGCAGTGGAGTCATCTGCTGATCTAGTCATAATGGCTGAAAACTGCAGGGCCACCAAAGAACCAAATTTTTATTCCTGGCCACATTATCAAATTGTACAGAATGGCTGCCCAAGAGACACTACGCTGGTTTACAAGTACGATCCCACCAGAAACTACCAACAATTTGAGATAAAAACATTCCGATTTTTCAACGATTACGATACTGTGTACTTCCACTGTGAGGTGTTAGCGTGCCACCGCTACTCCCCGAACTCGAGGTGCAGAAACAGTTGTTTGAACGTCAGAAAGAGAGAGAGGAGGGACGTTACTGGCGATGATTTGGGCCAGAAAGAGAGTACAGCTAAGCACATTCTCACAGGCGGTCCATTGATGGCCAAAAAGACAGAGACTGGAGATACAAGGCAAATTAAAAACGCTGCTCTGATTGGAGGCGTGGCAGGCGCCAGTGGATTTGGTCTCATTGCTGTCATAGCCCTGGCTGTTCTCTTTGTGAAATATCGCATAGTACGTCGATCCATGAACCGGGGATCGCTACGCCACACAGGAGAAGCAAATGAACAGGAAAAATGCCTACATTCAGGAGACGACATGATAGAAAGGGAAGACTCGTTTTAG

Transcript

gfas1.m1.6541.m1

CAACAACGTCAAAAAATCGACAACATTCGTGAAGTTAATGCTGCACCCCAAGAATTTAATTTTTATATTACCTCAAATGGTTAATGTGCCACTGGTATGCTATTTCAGCATCTCGGAAATAGTGACATCATCTCCACCTGGAATGCAACTTTCCTCTTTACGCTACAGTGATGGAGTCTTCTACCAAAATGTCACTTGGTATCCCAGCCAATATCAAGTCGGCCAACAGCTGTTTTGTTTCAAGGCGGTGGATTCGGCAAACATGGAAAGCGAGTACCGATGTGTCACAATTCTCGTGGGACTAAGAAACACACCTCGTGTCGTAATGGGAAGCCAAACGCCAAGGAACCGCGTCAGCAAACTTGGACCAGGTCTAACGTGGTGGAGCATACAGTTCGATCGAGTGATAAAGAAACCCAGAACATCTTCCTTCATCCGGCTTGTCTCGATACCTAGTGGTCACGCCGTTTACAAAGTAGATACTCTTTCCTCGTATGTCAGAATCAGCAGTGATCACACTACCTTGCAGTTCGCAATACCTAATGCAGCTTTGAGCATGAACGGTTCGTACGCTGTTCTGATAGATCAAGGTGCAGTAGTTGGACAAGGATGTTCCTATGACGGACCACCAACACCAGGCATAACATCTTCGAGTTTCGGGCGTTTTGCTACGTATGGCTTTTGCCCTTTCGGGTATTACCTTGAACCTCCAGAATTCACGACCTGTGTCGATATTAACGAGTGCGGTTATCTCTCGAGATCGAAACGCAGTAATAATTATTACTGGTGGAGTTACACATTTAGCTTCTCCCCAACATCCTCAACAACATCAACAGAATCTAGCATATCTGATATGATAAACTTCAGCGTGACAGCCAGTGTGACAACAATCTCAATCAACAACCTAACAACCAAAACGTTTGTGGGTACTGACACAATAGCAAGTTACATAAAAACGTTCATTCAGTTTCATCGGTGGCTATTCCGACTGGATACGTTCGCAACAGCTTCCCATAAGCTCTTCAGCGTTCGGCGTGTCTTAACAGACACATTCACCAGAAATCTCTGCTACACCATGAATACGCCGGGCAGCTACAGCTGTTCATGTGTTACTGGATATCAACTTGCCTCCGATGGAAGATCTTGCACAGACATTAACGAATGCTCGATCAACAATGGTGGTTGCAGTCATTATTGCTACAATATCCCTGGCTCATTTTACTGTGGATGCCCTGAAGGAACAACTATGGCTGAGAACAATTTGACTTGCTTTCAGCCTGGTATGAGTGTTACATGTGGCCATGGTGAAAACAACATGACTGTTTCATTAGACAAGCAAACATTCCCATTCTTTACTGTCAAGAATCTACATCTGCGATATTCTTCGTGCAGGGCCACACAGAATTCCACTCACTTAATCATTAGTACTCCGTTAAATGGCTGTGGAACACAAGTCAACGAAACACAGGATGATTTAATATTCTGGAATGAAATTCAAGTGGATGCGGTGGTCATCGATTTTGTCATCACTAGAACGCACGACATCAATATTCCATTTTACTGCAGCTATTCAAGAAGGGACAGGATAACAATGGCCTTTACTCCTGGGAATGTTTACTTCGGATTTGACAAGAAGTATGGAAATTTCACCTTTCGAATGGACTTCTACAAAAGTGCGTCATTTGCCACACCCTATTCTGAATACCCCATACCAGTGGCTCTCAACGACTATGTATATGTGAAGTACGCAGTGGAGTCATCTGCTGATCTAGTCATAATGGCTGAAAACTGCAGGGCCACCAAAGAACCAAATTTTTATTCCTGGCCACATTATCAAATTGTACAGAATGGCTGCCCAAGAGACACTACGCTGGTTTACAAGTACGATCCCACCAGAAACTACCAACAATTTGAGATAAAAACATTCCGATTTTTCAACGATTACGATACTGTGTACTTCCACTGTGAGGTGTTAGCGTGCCACCGCTACTCCCCGAACTCGAGGTGCAGAAACAGTTGTTTGAACGTCAGAAAGAGAGAGAGGAGGGACGTTACTGGCGATGATTTGGGCCAGAAAGAGAGTACAGCTAAGCACATTCTCACAGGCGGTCCATTGATGGCCAAAAAGACAGAGACTGGAGATACAAGGCAAATTAAAAACGCTGCTCTGATTGGAGGCGTGGCAGGCGCCAGTGGATTTGGTCTCATTGCTGTCATAGCCCTGGCTGTTCTCTTTGTGAAATATCGCATAGTACGTCGATCCATGAACCGGGGATCGCTACGCCACACAGGAGAAGCAAATGAACAGGAAAAATGCCTACATTCAGGAGACGACATGATAGAAAGGGAAGACTCGTTTTAGAAAAAGAAGGGTTTCTTTTACGACATTCTTTCCAACAATGAGTTCGTTTACTTTAGCTTTTGTAGGAATATACACCGCGGGTACGATTGGGGATCCTGTCCAACTGGGTTGAAATGATCGCTTGAAATTTCAGCCAAAATTTAGTCA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00100	Zona_pellucida	Zona pellucida-like domain	Family	Interproscan
PF14670	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan
PF12662	cEGF	Complement Clr-like EGF-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001507	Domain	Zona pellucida domain	Interproscan
IPR042235	Homologous_superfamily	Zona pellucida, ZP-C domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR048290	Domain	Zona pellucida domain, chordate-type	Interproscan
IPR026823	Domain	Complement Clr-like EGF domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14002	ENDOGLIN/TGF-BETA RECEPTOR TYPE III	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan