Gene detail

Detailed information of gfas1.m1.6888.m1 in Galaxea fascicularis

Genomic Location: Sc0000460:13663...27140
NR annotation: CAH3173552.1, unnamed protein product [Porites lobata]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gfas1.m1.6888.m1

ACATGCAATCCATCAATTGAACAACAAGAAAACTATTGGTTCTCGTTTAGGCTCCTTTGTGGGGAACATCAGTAGTGAATAACTGAAGCGAGTTGCAAAAAAGATCACCCTATTCGCGTCCTCCTTTACTTCCATTTCGTGCGATATTTTTCTTCACAAAGCACTTTAACGGAGGTCGTGAAACAATTCAGAAATTTGTAAGAATCTAGCGTTTTCCCGTTAATTTTTTTCGTAATCCAAGCTACTATAATCCAGTCCACTATCCGAATATTACGCAAAATCAGACACGCGTGGATCCCTCACCGATCGACGCAGTGTAACATCACATGCGGCAATTTTCCTCTTTCAGCTGCTATTTCTGAGCGGGAATTTTCCACTAAAATCATTGTTCATTATTCAGACTGGATTTCCGCCGTTGTGGTTAATTTTGAAGTTGTAAAATATTGGACCAAAAAGCCGCAGACGACGCACTTTCCAACACAGCATTCCAAATTTGGAATTGGTTTGTTTGAATGAACCAATCGCGTGCGGTGTTTTTTTAAGACGGGCCTGCCAACTCAAGCTGCTTCGAACGATTTCGAACATATTTGTGGGTTTGTCTCGAAAGCGAGTATCGCATCACGAAGCAAAAGAAAAAATGGCTGACCAACTTACAGAAGAGCAGATAGCTGAATTCAAGGAAGCTTTCTCACTTTTCGATAAGGATGGGGATGGCACAATTACCACAAAGGAGTTGGGAACTGTGATGAGATCTCTTGGACAAAATCCCACTGAAGCAGAACTTCAGGATATGATCAATGAAGTGGATGCTGATGGTAACGGCACCATAGACTTCCCAGAGTTCCTTACTATGATGGCAAGAAAAATGAAGGAAGCCGATTCCGAGGAGGAAATCAGGGAGGCTTTCCGTGTTTTTGAAAAGGAAGGCAATGGCTTCATCAGCGCTGCTGAGCTGCGTCATGTGATGACAAATCTGGGTGAAAAACTAACAGATGAAGAAGTTGATGAGATGATTCGCGAAGCAGATGTTGATGGCGATGGCCAGGTCAATTATGAAGAAGAAAAACTTCCTAAGAAAGTTCTCAAGATGTTTGCTAGTGCAGGCCAGCCGGAACTTGTTCGATCAAACCAAAAAGACGTATACAATGTTGGTTTCCTCAGGGAAGGTCTTGGACAGATATATCGCAATTTCAGAGGTCCATTTTCTTGGATAAAGTGGAAGACAGAGCTGGATTTATTGGCTGACTTTTGCTATTTTGGACTGACAACAATAAGTGGTTTTCAAACACTTGGAGAAGAGTACTGCAACATTGTTCAGGTTGACCATACAAGAACAAGAGTTCCTTCCATGGTGAGAAGAGGAAGTCTTGTTCTTCTGTATGTTTGTGGTCCTTACATTATTGAGAAAGTGCTATCAAAGCTTGAGCATTGGCTCCAGAGTCCTGAATCGTGGCCCAGTGGGCCTCATGTAAGAACAAGAGAAGCCATTTTAAATTTCATTCCTTTTCTGAGAACAGCAATCCTTTACACACACAGAGCACACATGGCACTATTCTATTTAACAGGAGTCTTCTATCACATTGCTAAAAGACTTACTGGAATCCAATATCTCTTAGTGAGAACAAGCCTAAAAAATGAAAGGTCCAGGCCAACCTATCGACTGCTTAGTTATCTCTCCATCATTCAGCTGAGCATTACTCTATTGCTGGCAATTTACCAGCATCTGAAATCTGATAAGTCATTTGAGCACCTTGTCCCATCTGGCAGCCAAGCATCCACAAGCACAACTCTGACCTCTGGCATCAAATGTGCCCTGTGTTTAGAAAGACTTCAGGGCAAAACTGCAACTCCTTGTGGTCATTTGTTTTGCTGGGGCTGCATTACTGAGTGGTGCAACAGTAAGGCCGAGTGTCCGCTGTGTCGTGAGCCAGTGCAACTGTCAAGGCTGGTGTACCTGCATCATTATGAACCCACATGAAGAGATCACTGGGACAGAGACAAAGCTGTTTATATGTTGTGTTTTAAATTTGGTTTTGGTTTAAATTTTTTTTTAACCAGTGTAATTTTCCTTTTTGTCAAATTTCTGAAACAAACTGGAAACTAAAAATCAAACTGGTTCGAAAAAATTTTAACCACAAGCATATACAAAAGATTTTTTATGTAACGGTGTACATGACTGTATATAAACGCAAAATTCCTCTGGACATCAATAAAGATTTAAAACTCGATTCTTCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q40302	Calmodulin OS=Macrocystis pyrifera OX=35122 PE=2 SV=3
P04464	Calmodulin OS=Triticum aestivum OX=4565 PE=1 SV=3
Q71UH5	Calmodulin OS=Globisporangium splendens OX=82926 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008129 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF04757 all species →	Pex2_Pex12	Pex2 / Pex12 amino terminal region	Family	Interproscan
PF13639 all species →	zf-RING_2	Ring finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR025654 all species →	Family	Peroxisome biogenesis factor 2/10	Interproscan
IPR006845 all species →	Domain	Pex, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23350 all species →	PEROXISOME ASSEMBLY PROTEIN 10	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005778 all species →	Cellular Component	peroxisomal membrane	Interproscan
GO:0007031 all species →	Biological Process	peroxisome organization	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0016558 all species →	Biological Process	protein import into peroxisome matrix	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gfas1.m1.6888.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.