Detailed information of gfas1.m1.707.m1 in Galaxea fascicularis

Genomic Location: Sc0000014:69272...107804
NR annotation: XP_044180589.1, LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like [Acropora millepora]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
G3MZY8DNA-directed RNA polymerase II subunit RPB1 OS=Bos taurus OX=9913 GN=POLR2A PE=1 SV=2
P11414DNA-directed RNA polymerase II subunit RPB1 OS=Cricetulus griseus OX=10029 GN=POLR2A PE=1 SV=2
P24928DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens OX=9606 GN=POLR2A PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02320UCR_hingeUbiquinol-cytochrome C reductase hinge proteinFamilyInterproscan
PF04997RNA_pol_Rpb1_1RNA polymerase Rpb1, domain 1DomainInterproscan
PF00018SH3_1SH3 domainDomainInterproscan
PF00621RhoGEFRhoGEF domainDomainInterproscan
PF04992RNA_pol_Rpb1_6RNA polymerase Rpb1, domain 6DomainInterproscan
PF04998RNA_pol_Rpb1_5RNA polymerase Rpb1, domain 5DomainInterproscan
PF13716CRAL_TRIO_2Divergent CRAL/TRIO domainDomainInterproscan
PF04990RNA_pol_Rpb1_7RNA polymerase Rpb1, domain 7DomainInterproscan
PF04983RNA_pol_Rpb1_3RNA polymerase Rpb1, domain 3DomainInterproscan
PF05000RNA_pol_Rpb1_4RNA polymerase Rpb1, domain 4DomainInterproscan
PF00623RNA_pol_Rpb1_2RNA polymerase Rpb1, domain 2DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR023184DomainUbiquinol-cytochrome C reductase hinge domainInterproscan
IPR036028Homologous_superfamilySH3-like domain superfamilyInterproscan
IPR018159RepeatSpectrin/alpha-actininInterproscan
IPR007080DomainRNA polymerase Rpb1, domain 1Interproscan
IPR001452DomainSH3 domainInterproscan
IPR036811Homologous_superfamilyUbiquinol-cytochrome C reductase hinge domain superfamilyInterproscan
IPR000219DomainDbl homology (DH) domainInterproscan
IPR045867FamilyDNA-directed RNA polymerase, subunit beta-primeInterproscan
IPR001849DomainPleckstrin homology domainInterproscan
IPR007075DomainRNA polymerase Rpb1, domain 6Interproscan
IPR007081DomainRNA polymerase Rpb1, domain 5Interproscan
IPR011993Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR001251DomainCRAL-TRIO lipid binding domainInterproscan
IPR038120Homologous_superfamilyRNA polymerase Rpb1, funnel domain superfamilyInterproscan
IPR007073DomainRNA polymerase Rpb1, domain 7Interproscan
IPR035899Homologous_superfamilyDbl homology (DH) domain superfamilyInterproscan
IPR001331Conserved_siteGuanine-nucleotide dissociation stimulator, CDC24, conserved siteInterproscan
IPR007066DomainRNA polymerase Rpb1, domain 3Interproscan
IPR000684RepeatRNA polymerase II, heptapeptide repeat, eukaryoticInterproscan
IPR007083DomainRNA polymerase Rpb1, domain 4Interproscan
IPR038593Homologous_superfamilyRNA polymerase Rpb1, domain 7 superfamilyInterproscan
IPR044893Homologous_superfamilyRNA polymerase Rpb1, clamp domain superfamilyInterproscan
IPR006592DomainRNA polymerase, N-terminalInterproscan
IPR000722DomainRNA polymerase, alpha subunitInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19376DNA-DIRECTED RNA POLYMERASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0003899Molecular FunctionDNA-directed 5'-3' RNA polymerase activityInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0005085Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0001055Molecular FunctionRNA polymerase II activityInterproscan
GO:0005665Cellular ComponentRNA polymerase II, core complexInterproscan
GO:0035556Biological Processintracellular signal transductionInterproscan
GO:0006366Biological Processtranscription by RNA polymerase IIInterproscan

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