Gene detail

Detailed information of gfas1.m1.714.m1 in Galaxea fascicularis

Genomic Location: Sc0000014:173360...193566
NR annotation: CAH3175489.1, unnamed protein product [Porites lobata]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gfas1.m1.714.m1

TTTTTGTATCATCTGTTCGCAGACTTCTTTTATCGCCAGGGAAAAACGTTCGACAAACGTACGCTAGCTTTATTGAAAAATTGGCATTGGCAAAGACGTCGATGCAAGTCACGCCTGACACCTCTTGTATTCAAGATGGCGGATCACTGGGTAGCAGAGGTTTTCCCTCCTAAATTCCAGTTTGGAAGTGTCGAGGAGATGCTACATAAACCAGGGTTAGTTGAAACAGAGAATGAAAAATTCAATAGCCTTGACAAGGTGTACCGGAAAGTTTATTTTGAACAAGAAAAAACTAAGAAATTGAGAGGTAAAGAATTGAAGTTACAACATAGGGAGAAGCAGGATGTTTCCAGTGTCAGACCTGAAAGACAAAGAAAGCAGGAGATAAAAACACAAAGAAAGGACGAGGATGAGTGTATATGGAATGAAAAAGAGTTGAAAACACTTCGAACGTTTTTTCAAAAGGCTAAAATGCAAAATCTCCAACTCGCCACCATGTTGGAATCAGCACAAGACGAGGTTAACGTGTGGAAAGAGAAGTATAGGGAAGTGGCCGAAGCAAATGACGTTATGAAAAACAGGTCACTTATTCTTAAAAAGAAATATGAACGGTTGAAAGTGAATTACAGAGCGTTGAAGGAAGATGTGAGAAGATATCACACTAACCTAAAAGTCACCAGACAGGATTGTGAAGAACTGAAATCTGAGAAAAGTGAAATTGAGGAGACATTGAACCAAAAAAAATCAGAGCTGCATAGTGAGAAATTCCACAACGAACATCTTCAGTCGAGACTGGACAGAAAAGAAAGAGAATTTGAGGAAAATGTAAAAAGGTGTGAGTACTTCCTAGAACAACAGCACCAACTTGGAAAAGCAAAATTACATCAAGAAATTGATAGACTGAATAAAGAACTGAAAATAGAACGCGAAGACAATAACTTGAATAAGAAGGCTCTTGAGCATCTGAGGAACCATTTTGCCAACTTACAAATAAATCAGGATGATACAGAAGGAATTAAAGTTATGGATAAAGTTCTAAGTGTTATAGATATTGACTACCTCCCAGTAATGCAAAGGGGCACAAAGATTTCTACTTCGACCCGAGTTCTTCGATTGAACACCAGTCAATATCGCCGCGAGTACAAGAGCGGGGCTGTTTATCATGGTGAACTAGAAGGAACAAAAAAGAGTGGCAAAGGGATTTTTAAGTGGCCCAGTGGAGCTTGTTATGATGGAGAATATGTGGACAATACAAGGCATGGTTGTGGAAGGCAGTATTGGCCAGATGGCTCTGTATATGAAGGGGATTTAGTGCGAGACCTTCGACATGGTGTTGGAACTCTCACCTGGCCGGACGGAGAGAGTTACAGTGGAGAGTTTAACCGTGACAGGAAACATGGCAAAGGAGTCTATACCTGGCCAGATGGCACAAAATTTGAAGGCTACTTTGAGAATGACAAGAAGGAAGGCTTCGGAACGTTCACTTTTCCCAGTGGAAACAAATTTGAGGGACTATACAGACGGGATGAGCGAGAAGGTCCTGGGGTGATGACATATTCTAACAATGAACAAGATGTTGGTCTTTGGTCTGGTGAACGTCTCATTAAACTGTGCTCAGTTATGGACAGTGCATTTCTTTTCCAACACTACTCAAATTACAATGTGAATGCTGGAAACATGCTATCAGGCAAAGTGAGGCGAGCTAACAGTGCAAAGGAGAGTGTAAGGAATTCCACTCCTTCTGTACAAGACTTTGAGGGAATTGACTATGATAAACTGTTGTCTCAAATTCCAAATTCCTTTTCATACTCAGACATTTTAGAAGGTATTCGTGGTGACAAGGGTCCCAAAGGACCTGTTGAGCAGGCGTCCGAAGAACTTTTGCGAGCATCAGCTGAAGGTGACTGCTTTAAAGTTAGAAAGTTGATTGAAACTGGGAGTGTTCATGTGGATGTGGCTGACAAAACTGGATATACTGCACTTCTAGCTGCTTCAGTAAATTGCCACCGAGATGTCATAAACTGTCTGCTTGATAGTGGTGCCAATGTGAACAAGTTAAATGATGAAGGATTGTCTGTTCTAGCAGCATGCCATGTATTGTTCTACACAAAACACACTTGGAAGGATAACATTGCTGAAAACATACCCAAAGAGAACTTGTTCAATTGTATACAGGAAGATCGTCAAAAAGGAACTTACGTACATAGGAATTACCGCCAAAGTGTTGTGGTGGAAGGTGATAAGTTAGAAATAAACAGGGAGTATGGAGAGGGTGCAGAGGAAAACTCTGAAGATGAATGTGTAGAGAATTGCAATCAAAATGAGAACAATCAAGTTGATACCGATAATCAAAGGATGTACACAATAATTGAATTTGCTGGCCAGACATTTGGAGATACATGTAAGGATGCAAAGAGTGGTGAACTAGAGAACAATTTAAACAATACTGCAAAAACTAAGATAGATTTAAATAAAAATGGTGTTGTGAACAATATGAATGTTCAAAGAACAAAAAGAATAATGGAAGATGGTGCTGACAATCATTTGGACTCAGGGATGCTAACACCAATCAGCAATTTATCATTGAGACATGAGAAGATGGGTGATAAAACTGACAAACTCAGCATAACAGACACATCTCTATTCAGTATGATGACTGCAATCAGCAGCACAAGGCAGCCATCAGAATCAGCTGATGATGTGCATAGAGAAAATAGCATGGACCAAAACAAGCAAGCATTGCTAGCTGTTCAAAGACGTCCTCATCTTGAAGCAACAGTTCGTCTTCTGCTTAAACGAGGTGCTGACCCTAATGCCTCATCTCTTCCAATGCCAGTTCTTTTCTTTGCTGTGAAAGCTGCTGATACTGCTGCTGTGGAAATTTTACTCCAGAAGGGAGCTGACACATCAGCCAAGTTATCTGAAGAGCAATCAGGGATTGCACCTCTTCATATTGCTGTAGCTTTGCCAGATGAAACAGGTGTTGAGATCACCAAGCTTCTTCTTAAATCTGGAGCAGATCCTGACATAAAAGACACTGCATTTGATTCAGAGGATAATGGCAGGACACCAGCTCATATAGCATGTTCACGGGAGGACAATGACAAGGTATCATGTGCTGTAGTGTGCCTTTTGTTGGAATATGGAGCTGATCCTGACCTGCTGTGTGAGGGACACTCTGCACTTTCTTTGGCAATCTGTAGTGGAAATGATCTGGCTGTAGACACACTTTTGGAGCATGGGGCTAACCCTAGCCTTTGTCTTTCGAAAGGGGTAGGGTCAGCACTCTGTGCTGCTACCTCTTTTATGGCTGAAAGAAGAAGAACTCCTGCTGGAAGAATAAAACTTATAAACAAATTGATGAGAGCTGGAGCAAACATCCTGTCCCCAATAACTGTGAACCTCAAGTATCCCCCTGGCACTGTGGTGGACTATGCTTACACTGTGTTTTATCAGGATCGCAAGATCGCCCATACCCCTTACCATGCCCTGACAGTAGCTGAGCGTGATTGTTACAATGCCCGCCGGGAAATGTTGGATCACCTTGGAGATCTGTTGCGCACGCAGGTCCTGAAGAAAGAGAAAGAACTGATTGATAAACAGATTGAAGAGGCTGAGAGGCAGGCTGAAGCACAGAAACCCGAGGGAACCTCACAATTAGCTTGGGGTATTTTGAAATCACCTGGCAAGGCCAGCAAGCTGAGAGGTCATGATCACTCTCCTGCTGGGAGAAATCAAGACCGTACCCCTACTGGTAGAAATCAAGGCCGTACCCCAACTGGGAGAAATCAAGATCGTACCCCTACCGGGAAAAACGATGGTATGAGGTACAGCCGAGTCAGCTTCCGTCTTGAAAACGAGGTTTTTGGAGGAGATGAAAACGAGGCTGAGGCAGATCGTGAAGTTCAGGCTATCACCGGAACAGACGAAGAGAGCCCTGGCGAGGTGTGTTATGCAACTCTGTTTTTCAGTGATTGTTTTGGTGTAGATGAGATGATTCAGCATGACAGTGTTTTAACATCATTATTTAATTTACAGGAAGATAAAAGGAACATGACTTCAGATCTTTCACCATCTGCTGAGGTCAGCAAAGAAAGTACTCCATGTTCGCTTGGGTCCAGTGTTCCTGAACAGCTGTCCACTCAGCCCTCATCTACAGGTCGAGATGAAAACTGTGGTTTGCGCATTGCGGTAACCAAAGCCGCTGACCACATGAGCATCTCGGCCCTGGCGACTCAAGCTCTGAAGCAGCGGCAACAGGTGATGAAAAACCGCTTCCGGTACTGTTATGAGTGCGGCCGCTCGATTGCAATCCGTTTGTCGGCTTGTACAAGATGTAAAGAAGTGTTTTATTGTAGCAAGTCCTGTAAGCTGAAGGCGTGGAATGCAAGGCATAGGGAGGAATGTGTCAGATTGACAGGTGGAGTAAAGACAGCTTTGAGTCGACGAGCAGAAAGTCCCACTCCGACAACAGACCCTGATGACTCTCCCCCCTCTTCTACCGTCACGGGTTCCCAAAGAAAGACCCCTTCACGGGGAAGGGGTGAGAAGTTTGTCTTAGTGAAAGTTCCGGACACATGCAAGATAGCCTGCAAGGCTCAATGA

Transcript

gfas1.m1.714.m1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9P2S6	Ankyrin repeat and MYND domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ANKMY1 PE=1 SV=2
Q8C0W1	Ankyrin repeat and MYND domain-containing protein 1 OS=Mus musculus OX=10090 GN=Ankmy1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006353 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01753 all species →	zf-MYND	MYND finger	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF02493 all species →	MORN	MORN repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002893 all species →	Domain	Zinc finger, MYND-type	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR053064 all species →	Family	Ankyrin repeat and MYND domain-containing protein	Interproscan
IPR003409 all species →	Repeat	MORN repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15897 all species →	ANKYRIN REPEAT AND MYND DOMAIN PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gfas1.m1.714.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of gfas1.m1.714.m1 across 22 RNA-seq samples of Galaxea fascicularis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

22Samples

15TPM > 0

4Conditions

29.9Max TPM

11.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
coral holosome · Control	7	3	5.59	13.91
coral holosome · 30ic treatment	6	5	14.32	23.23
coral holosome · Prometryn (herbicidess) treatment	5	3	11.38	29.91
coral holosome · Prometryn (herbicidess) and 30ic treatment	4	4	16.24	19.21

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27118486	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	13.91
SRR27118492	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	13.62
SRR27118487	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	11.58
SRR27118480	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	0.00
SRR27118485	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	0.00
SRR27118488	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	0.00
SRR27118491	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	0.00
SRR27118477	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	23.23
SRR27118466	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	17.35
SRR27118479	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	16.70
SRR27118478	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	15.54
SRR27118476	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	13.11
SRR27118468	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	0.00
SRR27118484	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	29.91
SRR27118469	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	14.88
SRR27118481	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	12.12
SRR27118482	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	0.00
SRR27118483	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	0.00
SRR27118489	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	19.21
SRR27118490	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	16.87
SRR27118475	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	15.53
SRR27118472	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	13.36

Source: CnidoSite RNA-seq expression matrices (GFASC_TPM, StringTie quantification over 22 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.