Gene detail

Detailed information of gfas1.m1.7268.m1 in Galaxea fascicularis

Genomic Location: Sc0000508:76847...84540
NR annotation: XP_020619764.1, tyrosine-protein kinase BAZ1B-like [Orbicella faveolata]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gfas1.m1.7268.m1

GCCAGTGAAGCGAGCCTGGGAGACTCTGAGGACAGCTCTTCTGGTGACGAGATAGACGAACATGAAGATTACTGTCACGTGTGTGGTGAAGGTGGCGATTTCATCTGCTGTGACACATGTCCGCTAGTGTACCATACGGCCTGTCATCAGCCTCCTCTTCGAAATATACCACGAGGAGCTTGGAGTTGTTGGCAGTGTCGCCAGCCAAAGAACAAGAAACAGAAGAAGAGTCTTCAAGGTAATCACAAGGCCAAGTCAAAGGCAGCCAAGACAAAGACCGGAAAACGTGGAAGCCCAGACGAAAACAAAAGTAAACGGTCCCGATCTTTCAGCTCCGAGGAATCAGGGTATGAGAAGGTTTCCAAACGAACACGTCAGAAACAACAACCAATGGAAATATCCGATGACGTCAGCCCACGTGGCAGGAAACGCAGAGCACGTGCTTCAATCGAGGAATTGTCGGATGATGATGATGTAATTGTCGGGAAAACGAAGGCCTCCAAAATCAGACGACTTAGTGATGATCAAGTGGTGGTCACAGATAACCGTGTTTTAGGCAAGCAACGGAGAAGATACGTACACAATTCCGACAATGAGGAGAAGAGTTCTGACTCAAACGTAAAATCGTTTTATGGCCGCTCAACCAGACGAACGCGTCAACGCAAAGATTCCAGTGATGCCGAAAACAGCAATGAAGGTGATATGAATGAGGGAGGGATACAAGGCAAGAACAGAGTTCGTAACCCTGGGCGTAATACTCGCAGAAAGAGAAGTCGAATCGCGGGAGATTCTGAGGATGAAGACGAGGAAATTGAGTCAGACGAAAAAGAAAACCGCCCAACGTCTCAAAACAAGAAGGACAGTCTCAAGAAGTCTGCTCGAAGATCTACGAGGAATAAGCGAAGGGTGTCGATCTCTTCCGAAGACTCCAATGGCGATGACGAAGTTGTATCGCAATCCACTGATCAAAGAGCTTCTCGAAGTAAGAGGAACCGTGGCTCAAAACCTGTTTTGAGATCGTTTGACGAGTCTGACGAGTCTGACGAGAGTGGTCTAAACACATCTAAGAGCAATACATTGAAGAGACGCGCGCTGAGAAATAGATGCCCTGAACCTAAAATGTCCGGTAAAGGTAGCGAGAAAGGACAGAAAAGGCGAAGAGGCAAGAATAAAAAGGAAGAAGATACTGAATCAGATGGGGCCAAGGAGGCAGACAGGCAAAAAAAGCAGAAGAAAAGTGTCATTAAAACCAGTTCCTCAGTTACAGAGAGGCAAACTCAAACAAGGAATACCAAAAGAGCCAAAGTGCCAGAAGAAAACAGCAAGGGAAAACGGCGACAAGCCAGCACAGACATGGATACTTGTGAGAAAATTTTGCGGGATCTCATTCTTCATGAAGATAGCTGGCCTTTCACGCAAGCTGTTAATCTGCGCGAGGTTCCAGATTACTTAGAACTCGTGAAGACTCCCATGGACCTGGGCACCATCCGGGACAAACTGAACAGCTTGGTGTACACAGATATCGAGAATTTTGTGGCGGACGTTCGACTAGTGTTTGAAAATAGTAACAAGTACAACTTGGATAATTCGGAGGTGGGAAAAGCTGGCAAGAACCTGGAGAAATACTTCAACAATCTTGTTAAACAGAAATTTTCAAACCCGGGAAGCAGATCAAAAGTTCAGAGAAAACGATGACCACGTAGTTTAATGATTTCTTTATGTCTCTGCAATATTGATATTATTTCTTAAGCTTTGGAAACAATTTGCGAAATCGAAACTGTTTTTTACTGATTTCAATCACAATATTGAAATATAGAATAACGATAAAGAAGAGGCATTTCTTTAACGCAATATTTCGAAAGAATTGTTTTGATCGTGCGATCAAGAACAGTAAAAAGCAAGAAAATAAATTTATTTTAAGGCGTTTATAACTGAGAATATTAAGACCCTTTTTAAGGTAGCACCATTATACTGAGAGCTTCACAGGAAAAAAAAATAAGGGATTCTTTGTCATTTTTTGGACTCTCGTTTTCTTTCTCGAACACAGAACTATACATGTAAGTTGAAGTTAGGTGCTGGGGATTTCATCGTTACTAGTTCGCTGACCGAACAAATAGTATATCGTTTTGTTTGCTTCTTTGTTTCCTTTTGTTTTACATCATGATGTTAGTGAAACATTTCCTGATTCTTTTTATAAGCTTAAATAAACTGTATCAATGATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9DE13	Bromodomain adjacent to zinc finger domain protein 2B OS=Gallus gallus OX=9031 GN=BAZ2B PE=2 SV=1
Q9UIF8	Bromodomain adjacent to zinc finger domain protein 2B OS=Homo sapiens OX=9606 GN=BAZ2B PE=1 SV=3
A2AUY4	Bromodomain adjacent to zinc finger domain protein 2B OS=Mus musculus OX=10090 GN=Baz2b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003139 (this species only)
Ubiquitin family	E3\|E3 activity RING\|PHD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan
PF00628 all species →	PHD	PHD-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR019786 all species →	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR018359 all species →	Conserved_site	Bromodomain, conserved site	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45915 all species →	TRANSCRIPTION INTERMEDIARY FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000790 all species →	Cellular Component	chromatin	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gfas1.m1.7268.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.