Gene detail

Detailed information of gfas1.m1.7324.m1 in Galaxea fascicularis

Genomic Location: Sc0000516:28136...48634
NR annotation: CAH3044645.1, unnamed protein product [Pocillopora meandrina]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

gfas1.m1.7324.m1

Transcript

gfas1.m1.7324.m1

ATGGCACAGGCTGTGTACGGAAGCATGTACTATATTCTAAGCTCCACTCGGCACGACTGGCCGTACGGGTTAAGCCCCGGGGGTTTACCGGCAGCGGAGGAGTACATGGGACATACATTCTGGGATCAGGACATTTGGATGTATCCCCCTCTTGTGTTACTGCATCCGGACTTAGCCAGAAGCTCCATGAGATACCGCAAGGATCGACTGCCAGCAGCGCGGAGAATCGCCACAAAGTATGGTTATAAAGGCGCGATGTTTCCCTGGGAGAGTTCCTTCACAGGGTTGGAGACTTCCCCTGGGGAAAGGTACGGAAAAGCTCAGATCCACATTAACGGCGACATTGCTTTTGCTGCTAAGCAGTTCTGGAGAGCAAGCAAAGACCTGAACTGGCTGCGAGAGATTGGGTACCCTCTTGTCTATCAGACCGCGAAGTACTGGGCAAGTAGAGTGGAGTACGATGTTGCAAACGATAGATATGTCATCAATCACGTGATGCCACCAGATGAATATCACTACCCTGTCAATAACTCGGTTTATACAAATGTGGTGGCTAAAATAAATCTTTTGTTTGCCAAAGAAGCCGCTGGAATATTGGGAAGGGAAGTTCCACAGGAGTGGTTAAAAATTGCAGAAAAGATAACTATACCTTTTGACAGCAAAAACAATTATCACCCAGAGTATGAAGGTTACACATTGGACAAGGAGGTAAAACAAGCCGACGCAATTTTGATTGGCTTTCCACTGATGTACGAAATGGACAAACAGGTTCGTTATAATGATTTGAAGCTTTATGAGGAACGCACTGACCTAGATGGTCCCGCTATGACAAACTCTATGTTCGCTATTGGTTGGCTGGATTTAGGAGAGAAGAAAAGGGCTGAGAAACCATTTCTGAAGAATTACACCAATATCCGGGGTCCCTTTAAGGTGTGGACAGAGCGTCGTGACATTTGGGGCGCCGTCAACTTTATTACAGGAGCTGGTGGTTTTTTACAGACTGTAATTTATGGCTATGGAGGATTCCGACTCAAGGAATCTGAACTGGCTTTCAATCCAACCCTACCTCCAAATGTGACAAAGATGACAATTCGCGTGCATTACCTCGGAAGTCAAATGGATTTTGTGATCAGCGAAGAAAAAGTATCGATCACGGTGGTGTCTGCTGGCCCTATAGCACCCGGCTTGGAAGTTTCAACGGCTAAACGGGTAGTACGTTTGGAATGCGGTAAACCTGTTACTGTTAACAGAGATCGGGTTTTGCCCATTATTGTATCGTTCTTCCGTCCATCCGCGGCAGTTGGCAACCCGACTCGCTTTGTCACCGACAAACTGCCGCAGGCATACAGCAGAAGCTCCGTGTTTCACAGCAGAGATGGCAATTTCATGCCGTCCGTGGGCAATGGCTATGTCGGCACAGTGATCTACAGTGATACAGTGCATGTCTCTGGAGTGTTTAACGGTCCGGCACATTCGAAGAAATACCCGATTTATCCTGTGTATCTTTATCAGCACGCACATCGGGCCCGCGTGCCTTCCACTGCATCTCTTAACTTCAAGGTCAAGGGAATCTCAGGGAGGAACTCGTATGCGCTGGACGTGTACGAGGGAGTGTTTTACAAATGGTTCAAAGCCGTCAATTTAACAGTGGAGCAAAGAGTCTATGCACACAGGACCAGGAAAAACCTCCTGGTTGTGGAAATCACGGCGAAGAACAAAGCAGAGAGGGAATTTCCCATTGAAATTATTCCAAACATGGGATATATCACCCAAGATATCCAGTTTTACATGACCAAGTCTGGGCGAAGCGATGCTCTAGCGGCTACTGGCCTAGTTAACCAAACTGAAGAGAAAGGGAGTATCCGACCTAATGTGGCCATTGCATGGACGTACCCTGATCCAAACGAACTGCTGACGATCACTAGCAGCCCTGAGGAACAGACATGGTATTACATCACCTCTATAGCAACCAACCTAGACACCAAGTTCAACCCACTCTCTGAAGCCCTTTATCAGTGGGACGAGGCTATGCTAGTCAAGGAGCAGCTGCTAGCAGAACACAAGGCAGCTTGGAAAGCATTATGGGACACTGGCCGAATAGAGATTGAAGGCGATTTAGAAATGGCGCAGGCGGTGTACGGAAGCATGTACTATATTCTAAGCTCCACTCGGCACGACTGGCCGTACGGGTTAAGCCCCGGGGGTTTACCGGCAGCGGAGGAGTACATGGGACATACATTCTGGGATCAGGACATTTGGATGTAACCCCCTCTAGTGTTACTGCATCCAGACTTAGCCAGAAGCTCCATGAGATACCGCAAGGATCGACTGCCAGCAGCGCGGAGAATCGCCAAAAAGTATGGTTATAAAGGTGCTATGTTTCCTTGGGAAAGTTCTTTTACAGGCCTGGAGACGTCTCCTGGGGAAAAGTACGGCAAAAACCAGAATCACATCACAGGTGATGTTGCGCTTGCAACCAAGATGCTCTGGGAGGCTACCAAGGACCTGCACTGGCTGCGGGAAATTGGGTACCCACTGGCGTATCAGACCGCGGAGTACTGGGCCAGCAGAGTGCAGTATGACGCTGAGCACGATAGATACGTCATCAATCACGTGATGCCACCCGACGAGTATCACTACCCTGTCAATAACTCCGTGTACACTAATGTGGTAGCTAAAATAAATCTCTTATTTGCCAAAGAAGCCGCAGATGTTTTGGGCAAGGAAATTCCCAAACTGTGGTCAACGATTGCAGAAAAGATGTACATTCCTTTTGATAGCAAACATCTTTATCATCCGGAATTCGATGGCTACAAACCAAATGTTCTGGTGAAACAGGGAGATGTTGTTCTTATAGGTTATCCTTTGATGTATGAAATGGGGAAACAGGTCCGCTACAACGATCTAGCTCATTATGAGAACCTGACAGACCCTCATGGTCCCGCCATGACACATGCGATGTTTGCTATTGGTTGGTTGGAAGCTGGCGAAAAGAAGAAAGCAGAGCGCGCCTTCCTGAAGAATTATGCGAACATACAGGGTCCTTTCAAGGTGTGGTCTGAGAGGCGATGGGGTCACGGCGCCGTCAACTTTATCACAGGAGCTGGAGGCTTCCTGCAGGCTGTTATTTACGGATATGGTGGCTTTCGTATCAGGCAGGATGGCCTGTACTTTAATTCCACCCTTCCCTCAAGGGCAACCAAGCTTGCGTTACGCATACACTATCTGGGAAGCTCAATCGATTTCGAGGTGCAAGTCGGTGGAGTGATCCTCACTGTGGTGAACAGTGGTCCCATATCTCCCCAGCTGGAGGTAGTGACAGGTGAAAGTGCGTACCAGCTGACACGAGGGAAGCCTGTCATCATGGAAGCATTGCATGGAGTGGTGCGAAAGCACCAATCAGGATGATGGAAATTCCTCTGACATCTTTCAGAAAATTCAACATAGTAACCTTCATGGATGCCTGGAATAGTCTTTACGAAGTATTGGACACAGCAAGCTTCTTAAGATGTTCCATGAACACTTGTAAACTGACATCATCGGTAAGAACAGGAGCGCCTGCAGCATCTTGGCCCCATGCAAACATGTTGTTATGGGTCTGGGACGGATTTACTTTGGACAGCAAGAAACGAGCCTATCGATATGGAAATAGCAAATTCTTAACATCTACATATCGCTTGGGAGTTGAAGGTTGGTAAAGGGTCCCCGTTAAGAGTACTCATGCCACTAAGTGCTTCTTGTTAAATGCTGGAAAAGGCCCATTGTTCACTGGCTCTGCTAGCAAGTCAGGTACCGCACGTCCACGTAGTGATACTGGATACACTAACTGAGCGGCAATGGCGAGAGGCGAGTTTGTGGCACCTCTAAATAACGAGAATACTGAGGCTAGGGGAAGGAAAACCCTACAGCTCTGGTCAAACTGCGCATGATAATGAACTATCATGCGCTAGGTCAAACGGGAAAAAGTATAGACTAACATGAGAAATTTGAGCAGGTTCAAAATGAATGATAGCGAATGATAGTGAATGATAGTGAATGATAGGCCATGATGGTTGGTGGTCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1NZI4	Protein-glucosylgalactosylhydroxylysine glucosidase OS=Gallus gallus OX=9031 GN=PGGHG PE=1 SV=3
A0JMP0	Protein-glucosylgalactosylhydroxylysine glucosidase OS=Danio rerio OX=7955 GN=pgghg PE=2 SV=1
Q8BP56	Protein-glucosylgalactosylhydroxylysine glucosidase OS=Mus musculus OX=10090 GN=Pgghg PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001492 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03633 all species →	Glyco_hydro_65C	Glycosyl hydrolase family 65, C-terminal domain	Domain	Interproscan
PF03632 all species →	Glyco_hydro_65m	Glycosyl hydrolase family 65 central catalytic domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008928 all species →	Homologous_superfamily	Six-hairpin glycosidase superfamily	Interproscan
IPR012341 all species →	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR005194 all species →	Domain	Glycoside hydrolase family 65, C-terminal	Interproscan
IPR005195 all species →	Domain	Glycoside hydrolase, family 65, central catalytic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11051 all species →	GLYCOSYL HYDROLASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02035	ABC.PE.S; peptide/nickel transport system substrate-binding protein	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.