Gene detail

Detailed information of gfas1.m1.733.m1 in Galaxea fascicularis

Genomic Location: Sc0000014:329169...333323
NR annotation: CAH3025218.1, unnamed protein product [Porites evermanni]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gfas1.m1.733.m1

TGTAATACTTGGAATGAGAACTAACTGTCCACTAATAAGAGCACATGTGTTAGTTTGCCTATGATGAATTCATTAGACTAAGAAACGCAGCTAAGTAAACACACGAAACAGAACCGCTTCTGATCTCTGAAAATATATTGTGTATGAATGGTTTATCTCCGCGACACATTGTTCCTTGGAACGACATGAAGAAAAACGGCCCGTGGAATAACGGAGTGTTGTCATGCACAGCTGTTTCGTGTTCTTTTGGCAAGACCTTTTATTCGAGGTACAATACGTTGCTAGAAGGGTAAGCGAATTTTGAGATTTGCTTGCTACATGAAATAAACAGTCAAAATATTTTTTGGAGTAACCAATCACAGCGTCTTTGTGCTAAAGTCTAAAACGACCGCTGTTATATAATTTACTTGCTTTTAATATTCCCGTCATTCTCACTTCACCTTCATGCTCTCTGTACCCTGCGAGCAGTTGGTTCAATCGGTAAAGAGCTGGAGAATGAGAATATGAATCATAAACTGAGAAAGCCGAATTGAGAACAAAGTTCTAATTTTGAACAACTGCAACGTATTCACAAATTAACAACGGTATCAACTCTTTCGCGCATATCATTTACAGGAACTCTTTATTTGTTAGCATTCGTTAACTATCCCAGCTGTGTTGATTCTCTGGCCTCCATATCGCTGCAGAATTAATTAGGAAAAACGTCATTCAGAGTTCATATTTCAAATGGCCACCAGTGTAAAATCGTGACCTTAAAATGTATCAGCAGCCAACAATAAACCAGCCAAACGGCTACAGTCCTTTACCAACATATGCAGTTTATCCAGTTTATGGTGAGGTGCCCATAGACATATCATGTCCGTACTGCCTCACCAGAGTATTCACAGTCACTACAAAGGAGCACGGAAACCTGACTTACGCTGCGGCAAGCCTGTTGTGTTTTATGGGGTGTTGGTTGGGTTGCTGCCTTATTCCATTCTTCATTGATTCGTGTCAGGATGTCATCCACACATGTCCAAACTGCAGAGCACCGCTGGGCAAATTTAACAGACTGTGTTGAAAGGAGGGAGAGGGATGCCCCCCTCAATAAGGGAAATTAGCTTGAATTGTCACAAAAAAATTAGGTGCTTTAAATGCACTTTGTAAGCTGTTATCTTTCCTCAAGACCTACGATATAACACAATACAGGGATGTTTGGAAAATTTTCACTGCTCCAAGAGCATTTTATTTCTTTCAGAGGTGCATTTTATGTACCACATTTTTCTACTCCTTTGCCTTCAAAGGAGTTTCATAAAATTTACTGATATCAACGTGGAATGGATATTTGTCAATATTAGAACAAAAAATAAATATTGGAGAGATCGATATTGCTGCTTATTTTGTACCCAAAGAGTTTCTGATATGTTACTCAAAAAAATGTAAGGGGAAATCTAACGCTATTATGTTGAAAGGATCAATAGCTTGCTAAACAATAACTCTCTTCATGGGTGCAGGCTTAGTTTAAAATTGCCCATTAGATTGCCAAACTTCTTACATCTTGGTCTCAGTGTTTATAACAACTATTCCTTTCTTTGTTTTCTGTAATCAAACTCAACCAAACACATCATCACTGTTGAGGTACGAGTCTGGTGCATTAATAGGGAGCCCTCTCTTCATTCTTGCTTTTGTCTTTGCTTTCTCCTCTTCCTCTTTTGCCAGCTGCTCCTCTCTTTGTGCTTCCAGAATTGTAGCTACTGAAACTTCCTCAAGTTTGGAGTTGGCTTCCTTTTCTTCATCCTTTTAACAAAACAAATTATCAATGGATTGTTATGGAATTAACATGATAAATGTCATTTTCATTCTATTTGTTTGTGCACAAATGGAAAATGTTGTGGATTGTGAATTTATAATGGCCAATAATCATCACCCAAAGGAAAGGAATTTTATTTTACTTCAGTCTCATTTCAGGGTCTCTCTTCTTGTTTGCTCCCAGGGATGGATTAAAACGATAGACACTACAGTACCAAACAACTACCTGCAAGATTGGGAGTGTATGATTTTCACTTGGTCACTAGGTTATTCATTTTATTTGCACTCACTCATGCACTCAGTCTCTCATTTGTCCTTTCCATTGGGTACTCAGCAGACCATTTGGTTGGTAAATTTCCCCATTGTGCATTGGTTTATATTCCTGTTTTGTTCAGCGCTTCTGCCAGTTGGTGGTCTGGTTAAAAGCTATTAATAACGCCAAACAAGCGTTACACGTCTAATTTCTCAAAACGTTCACAGACTACAATTTAGAAGTCTGTGGAACTGGAAGTTTGTAATAATAATAAATTTGACTTCTGTTCTTACTATCTCTCCAACAAGGACCATATTTTCTCCTCTGACAAGGAAAATTCCTCTGGGTATATCACCATACTTTTCTCCCACATGAATTCTCTCAATAGTATCTTGCAGTAAAAGGTTGGCTGAAAAATAATCCATTAACTTAATTATCATGTTGTGAGTCCATTTACAAGTTTTCACCTGAAAACTCTCAAGTATCATCACCTTCGTTTCAAATACATTTAAACTAAATGTCAAGATGTCACAGAAATAGCACTTGTCTACTTTTATTTATCAACAACAACAAGCTTTATTTGTCCCATCTTGAGATGTTTACATATGTTGAAACTCTCAATAACAGCAGTAAAAATGTGATTTTAGTAAGGAAACAACATTTTATTAAAGAATACATGTTTGGGCAGTTATTCTGCCATATTCAGGTGGAATATTACATAATTACAAGTAAATTACAACAAAAAGGAGGGGGCTTACTGCATGCTTTGATCAATAGAAACAACATTATGCCTGAAGGACAAGTTGTCATAATCAAGACAGAAAAGCCCATTCTAATTAAGTACAGGTTGCAAAAACAACTCTTAGGAAAAAAATAAAATATAAGCCAATGTAATCTAGTAGGAGGTCTTTAACCCTTTCCCTACTAAAAGTGACTTCATAGATTTTACTCTGGCTAATGCCAGATGACTTTACTCATCAAAGGGAGTCCTCTTAGGGGTTAAAGGGTTAAAAACTATCTCCCTTAAAGAAAAATTTGACCCATCCCTTAGCAAGAACACTTTGTCAAGTACAATTAGTAAGCAGTTACAAATACAGAAGGACACTGTTTCCAGTCCTGTTGAAAGTTTATTATCAAATGAAAGAGATTCTCTGAGCAAACTTACCAAACTGATCAATAGATCTCAGGTACCCTATTAATGTTCTTCCATCTCTCAAGACAACCATAAGCCTCTCTGTTGATTTATGTCAGAAAGGAAAATCTATCAGTAATATTGAAACTTTCAAGAGAATTAGTGCAAATAGAGTTGAGAGGTATTCAAACTCCAATATCTTGTTAGTTCATGAACCATTCAAACTCCAAACAAACCCTGTTATCAGCGCCATTTTGGCCTCAGTTCAAAATGGTGGCAAATCAAGAGAAATTACTGACTCTCCTTACTAACCCACTCAAAAATTAACTGGAAAGATTAAAACAACAAAATGAAAGTGACATTGCAGCTGAACCGCGTTCATCGTAAATTCTGGCTGAACTTAAATTTCAAAGATGGCAGAAACTTGGCCTGACTGAGGTCCTACTTTTTTTACTCATTTATGCGGTTCTCTTCTCTGATAAATGGGCAGAAAATAAATTGAAGCATCATCAAGTGTGCTATAAGTGTCTATGAAAACAACAACAGCAGCAAAGACTGGAAAAAATGAAAACAATAATTGGAGGATAAACACAAGCAAGCGACCTGCATGAATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q54HX8	Cell death-inducing p53-target protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=litaf PE=3 SV=1
Q8AVW3	Cell death-inducing p53-target protein 1 OS=Xenopus laevis OX=8355 GN=cdip1 PE=2 SV=1
Q5BJ83	Cell death-inducing p53-target protein 1 OS=Xenopus tropicalis OX=8364 GN=cdip1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000706 (this species only)
Transcription factor family	zf-LITAF-like · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10601 all species →	zf-LITAF-like	LITAF-like zinc ribbon domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037519 all species →	Family	LITAF domain containing protein	Interproscan
IPR006629 all species →	Domain	LPS-induced tumour necrosis factor alpha factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23292 all species →	LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19363	LITAF; lipopolysaccharide-induced tumor necrosis factor-alpha factor	-	Lysosome	ko04142	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.