Detailed information of gfas1.m1.7349.m1 in Galaxea fascicularis

Genomic Location: Sc0000518:74362...78330
NR annotation: XP_015779194.1, PREDICTED: uridine diphosphate glucose pyrophosphatase-like [Acropora digitifera]
Species Galaxea fascicularis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q05B60Uridine diphosphate glucose pyrophosphatase NUDT14 OS=Bos taurus OX=9913 GN=NUDT14 PE=2 SV=1
O95848Uridine diphosphate glucose pyrophosphatase NUDT14 OS=Homo sapiens OX=9606 GN=NUDT14 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003059 (this species only) · gene tree & orthology

 Pfam domain
No Pfam domain signature was recorded for gfas1.m1.7349.m1 in Galaxea fascicularis.
 InterPro
InterPro termTypeDescriptionSource
IPR015797
all species →		Homologous_superfamilyNUDIX hydrolase-like domain superfamilyInterproscan
IPR000086
all species →		DomainNUDIX hydrolase domainInterproscan
IPR004385
all species →		FamilyNucleoside diphosphate pyrophosphataseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11839
all species →		UDP/ADP-SUGAR PYROPHOSPHATASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016818
all species →		Molecular Functionhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydridesInterproscan
GO:0046872
all species →		Molecular Functionmetal ion bindingInterproscan
GO:0006753
all species →		Biological Processnucleoside phosphate metabolic processInterproscan
GO:0008768
all species →		Molecular FunctionUDP-sugar diphosphatase activityInterproscan
GO:0019693
all species →		Biological Processribose phosphate metabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K08077NUDT14; UDP-sugar diphosphataseEC:3.6.1.45
Enzymes with EC numbers-deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of gfas1.m1.7349.m1 across 22 RNA-seq samples of Galaxea fascicularis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

22Samples
16TPM > 0
4Conditions
121.8Max TPM
31.1Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
coral holosome · Control 7 5 27.69 53.38
coral holosome · 30ic treatment 6 5 28.50 45.75
coral holosome · Prometryn (herbicidess) treatment 5 2 15.33 48.66
coral holosome · Prometryn (herbicidess) and 30ic treatment 4 4 60.58 121.83

Per sample · hover a bar for the full sample record

Show the sample table (22 samples)
SRA runConditionTissueDevelopmental stage TreatmentStudyTPM
SRR27118491 coral holosome · Control coral holosome not recorded Control SRP476288 53.38
SRR27118492 coral holosome · Control coral holosome not recorded Control SRP476288 37.89
SRR27118486 coral holosome · Control coral holosome not recorded Control SRP476288 37.45
SRR27118487 coral holosome · Control coral holosome not recorded Control SRP476288 35.64
SRR27118480 coral holosome · Control coral holosome not recorded Control SRP476288 29.44
SRR27118485 coral holosome · Control coral holosome not recorded Control SRP476288 0.00
SRR27118488 coral holosome · Control coral holosome not recorded Control SRP476288 0.00
SRR27118466 coral holosome · 30ic treatment coral holosome not recorded 30ic treatment SRP476288 45.75
SRR27118477 coral holosome · 30ic treatment coral holosome not recorded 30ic treatment SRP476288 35.56
SRR27118478 coral holosome · 30ic treatment coral holosome not recorded 30ic treatment SRP476288 33.38
SRR27118479 coral holosome · 30ic treatment coral holosome not recorded 30ic treatment SRP476288 28.47
SRR27118476 coral holosome · 30ic treatment coral holosome not recorded 30ic treatment SRP476288 27.86
SRR27118468 coral holosome · 30ic treatment coral holosome not recorded 30ic treatment SRP476288 0.00
SRR27118469 coral holosome · Prometryn (herbicidess) treatment coral holosome not recorded Prometryn (herbicidess) treatment SRP476288 48.66
SRR27118481 coral holosome · Prometryn (herbicidess) treatment coral holosome not recorded Prometryn (herbicidess) treatment SRP476288 28.00
SRR27118482 coral holosome · Prometryn (herbicidess) treatment coral holosome not recorded Prometryn (herbicidess) treatment SRP476288 0.00
SRR27118483 coral holosome · Prometryn (herbicidess) treatment coral holosome not recorded Prometryn (herbicidess) treatment SRP476288 0.00
SRR27118484 coral holosome · Prometryn (herbicidess) treatment coral holosome not recorded Prometryn (herbicidess) treatment SRP476288 0.00
SRR27118489 coral holosome · Prometryn (herbicidess) and 30ic treatment coral holosome not recorded Prometryn (herbicidess) and 30ic treatment SRP476288 121.83
SRR27118490 coral holosome · Prometryn (herbicidess) and 30ic treatment coral holosome not recorded Prometryn (herbicidess) and 30ic treatment SRP476288 53.85
SRR27118472 coral holosome · Prometryn (herbicidess) and 30ic treatment coral holosome not recorded Prometryn (herbicidess) and 30ic treatment SRP476288 39.76
SRR27118475 coral holosome · Prometryn (herbicidess) and 30ic treatment coral holosome not recorded Prometryn (herbicidess) and 30ic treatment SRP476288 26.88

Source: CnidoSite RNA-seq expression matrices (GFASC_TPM, StringTie quantification over 22 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

Co-expression network

Genes whose expression across the transcriptome samples of Galaxea fascicularis tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

DirectionPartnersMost correlated partnerPCC
Positively correlated25gfas1.m1.1235.m10.93771647364892
Negatively correlated10gfas1.m1.22575.m1-0.767132828396702

Open this gene in Network Analysis → The network opens with the gene already entered and both directions selected. There you can add up to 9 more genes, switch between the positive and negative network, and export the edge list.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Galaxea fascicularis, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.readyopen →
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
TOP