Gene detail

Detailed information of gfas1.m1.78.m1 in Galaxea fascicularis

Genomic Location: Sc0000001:275300...276997
NR annotation: CAH3039253.1, unnamed protein product [Porites lobata]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000880 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00965 all species →	TIMP	Tissue inhibitor of metalloproteinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008993 all species →	Homologous_superfamily	Tissue inhibitor of metalloproteinases-like, OB-fold	Interproscan
IPR001820 all species →	Family	Protease inhibitor I35 (TIMP)	Interproscan
IPR001134 all species →	Domain	Netrin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11844 all species →	METALLOPROTEASE INHIBITOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008191 all species →	Molecular Function	metalloendopeptidase inhibitor activity	Interproscan
GO:0002020 all species →	Molecular Function	protease binding	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0010033 all species →	Biological Process	obsolete response to organic substance	Interproscan
GO:0010951 all species →	Biological Process	negative regulation of endopeptidase activity	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0051045 all species →	Biological Process	negative regulation of membrane protein ectodomain proteolysis	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gfas1.m1.78.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of gfas1.m1.78.m1 across 22 RNA-seq samples of Galaxea fascicularis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

22Samples

16TPM > 0

4Conditions

228.3Max TPM

45.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
coral holosome · Control	7	6	55.29	138.66
coral holosome · 30ic treatment	6	5	54.34	227.66
coral holosome · Prometryn (herbicidess) treatment	5	2	48.07	228.26
coral holosome · Prometryn (herbicidess) and 30ic treatment	4	3	9.69	17.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27118491	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	138.66
SRR27118485	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	124.72
SRR27118480	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	51.79
SRR27118486	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	29.50
SRR27118487	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	23.50
SRR27118488	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	18.89
SRR27118492	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	0.00
SRR27118468	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	227.66
SRR27118466	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	45.68
SRR27118479	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	18.38
SRR27118478	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	17.85
SRR27118476	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	16.45
SRR27118477	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	0.00
SRR27118469	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	228.26
SRR27118481	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	12.09
SRR27118482	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	0.00
SRR27118483	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	0.00
SRR27118484	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	0.00
SRR27118475	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	17.00
SRR27118472	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	11.34
SRR27118490	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	10.42
SRR27118489	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	0.00

Source: CnidoSite RNA-seq expression matrices (GFASC_TPM, StringTie quantification over 22 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.