Gene detail

Detailed information of gfas1.m1.7832.m1 in Galaxea fascicularis

Genomic Location: Sc0000587:28052...32760
NR annotation: XP_015770509.1, PREDICTED: glycolipid transfer protein-like [Acropora digitifera]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NZD2	Glycolipid transfer protein OS=Homo sapiens OX=9606 GN=GLTP PE=1 SV=3
B0YN54	Glycolipid transfer protein OS=Pan troglodytes OX=9598 GN=GLTP PE=2 SV=1
P68265	Glycolipid transfer protein OS=Bos taurus OX=9913 GN=GLTP PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001900 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08718 all species →	GLTP	Glycolipid transfer protein (GLTP)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036497 all species →	Homologous_superfamily	Glycolipid transfer protein superfamily	Interproscan
IPR014830 all species →	Domain	Glycolipid transfer protein domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10219 all species →	GLYCOLIPID TRANSFER PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0120009 all species →	Biological Process	intermembrane lipid transfer	Interproscan
GO:0120013 all species →	Molecular Function	lipid transfer activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gfas1.m1.7832.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of gfas1.m1.7832.m1 across 22 RNA-seq samples of Galaxea fascicularis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

22Samples

17TPM > 0

4Conditions

446.4Max TPM

99.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
coral holosome · Control	7	4	76.42	234.54
coral holosome · 30ic treatment	6	5	146.22	446.45
coral holosome · Prometryn (herbicidess) treatment	5	4	75.94	136.80
coral holosome · Prometryn (herbicidess) and 30ic treatment	4	4	98.60	104.76

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27118492	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	234.54
SRR27118486	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	117.47
SRR27118487	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	101.39
SRR27118480	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	81.51
SRR27118485	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	0.00
SRR27118488	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	0.00
SRR27118491	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	0.00
SRR27118477	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	446.45
SRR27118466	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	127.61
SRR27118476	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	107.77
SRR27118478	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	102.11
SRR27118479	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	93.41
SRR27118468	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	0.00
SRR27118469	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	136.80
SRR27118481	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	118.84
SRR27118484	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	67.58
SRR27118483	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	56.50
SRR27118482	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	0.00
SRR27118475	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	104.76
SRR27118472	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	103.84
SRR27118489	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	100.22
SRR27118490	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	85.58

Source: CnidoSite RNA-seq expression matrices (GFASC_TPM, StringTie quantification over 22 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.