Detailed information of gfas1.m1.7865.m1 in Galaxea fascicularis

Genomic Location: Sc0000591:67469...81702
NR annotation: XP_027053703.1, ETS translocation variant 1-like isoform X1 [Pocillopora damicornis]
Species Galaxea fascicularis · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P50549ETS translocation variant 1 OS=Homo sapiens OX=9606 GN=ETV1 PE=1 SV=2
Q2KIC2ETS translocation variant 1 OS=Bos taurus OX=9913 GN=ETV1 PE=2 SV=1
P41164ETS translocation variant 1 OS=Mus musculus OX=10090 GN=Etv1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003128 (this species only)
Transcription factor familyETS · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04621
all species →		ETS_PEA3_NPEA3 subfamily ETS-domain transcription factor N terminal domainFamilyInterproscan
PF00178
all species →		EtsEts-domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000418
all species →		DomainEts domainInterproscan
IPR036388
all species →		Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR046328
all species →		FamilyETS familyInterproscan
IPR006715
all species →		DomainPEA3-type ETS-domain transcription factor, N-terminalInterproscan
IPR036390
all species →		Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11849
all species →		ETSInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003700
all species →		Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0043565
all species →		Molecular Functionsequence-specific DNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0030154
all species →		Biological Processcell differentiationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K09431ETV1; ets translocation variant 1-Transcription factorsko03000deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of gfas1.m1.7865.m1 across 22 RNA-seq samples of Galaxea fascicularis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

22Samples
17TPM > 0
4Conditions
51.2Max TPM
23.6Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
coral holosome · Control 7 6 23.32 32.25
coral holosome · 30ic treatment 6 5 29.58 51.21
coral holosome · Prometryn (herbicidess) treatment 5 2 13.87 38.69
coral holosome · Prometryn (herbicidess) and 30ic treatment 4 4 27.34 31.87

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (GFASC_TPM, StringTie quantification over 22 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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