Gene detail

Detailed information of gfas1.m1.7871.m1 in Galaxea fascicularis

Genomic Location: Sc0000592:8870...29766
NR annotation: CAH3109698.1, unnamed protein product [Porites lobata]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gfas1.m1.7871.m1

GCGTTTTAGTAAGATATGAGTTAAATCTTTAATATTCTATATTTTAATTTTAAAGAAATATCTAAAGGTTGTTTTGAAATCTTTGATGTTTAGTGCCTTCTCCTAATTTAAAAACTGCCTCAGCTGTTGAGCTCTGTTTTATAGATTTGTACCTAGAAAATGAGTGACAGATACTTGTTAGTAACACTGAATATCTTTTGCAGTTATCCTATTTCCTTTTTGTCAATCATGAACACAATCAACTCTGTCTTCATCATAAATGTAGCAATCGATGTTGATCTCCACATTTTTAAGGTCAAATTTAAACTTTTTTGTGGTTATAAATAAGTATTTCGGAGCATCTTTCAAAATAGACGGAAGACGTGAAAGAAGGGAATACAAGTTGTGTTTGCAGGTGTTCAACTTATACCAGCCAATGCGAATGATTTGCATTCCCTGAGAAAATGACTTGACGTTCTTTGTTCGTTTCGATTTCTTATTGTTTCAGCGGAAATACGTCATCAAACTTTCTGAAGAAAGCGGAAGAGGAATATGAAATCATTCTCTACAGTAAACCGTGATTACACACACGCAGTAAATTATTTATTCCGTAAAGTTCCGTAATTTTTAAAATAGCGCAGCGCACAAAGCTGTTAGGCTCCGGTATCGCTTCGTCTAGTTTGTCGCTTAAGGTTGTAACGATGAAGCTGTCCTTCCTTCCTGTAAAAGTGCTTCTTCGAAAGAAACCGAAATTTAAAAGGCGAAGAAAAAGTGGCAAAAAAAGAGTAGCTCGGCCCAGACCAAGTCCGCATTATTGTGCCGAAATGGACACCGCATCGGGTACGGAAGGAGAAATAAACGACTCCACGAGTTCCATGAGCTGCTTCAACGAATTTGAAACATTTGCAGATGAAGTGAATGGCGAAATTCCCGAGGTAGACTGCCGAGGAAGATTAAAGAGTGAAAAGTCTTTGTCAGATTTCGATGAGACCGCAAGTTTACTAAACCAGTCACAAATCATCAAAGCAGACAAGACACCCAGCTTTCTTAAGTCACTTCTCTCCCCAAGAACCCCTTATGAGGATTTTCATCGCCTCTTTAAAACTGTTCCTAAAGACCAATTTCCAATAAATGATTTTTCCTGTGCTTTAAGTCGGGAAATACTGCTTCAAGGACGGATCTACATAAGCCAAGGATGGTTCTGCTTCTATTCAAATATATTTGGCTGGGAAACACAGGTGACAATAGATTGCAGAAAGATCCAGTCAATAACAAGAGAAAAAACAGCTTATGTTGTGCCAAACGCTATACTCATTTGCACAGATGAAGAAAAGCACTTCTTCTCATCATTTCTGTCAAGGGAAACTGTTTACAAGCTCCTTCTACAAGTATGGGATGAAATAAAGGGGAAAAAAGAGAAGACAGATAGTGTAAAGGAAGACAATCAGGATGAAGAATCAACAGGATGCAGTAAATGCCAACAAACAAGACAGACAGCGGTTGATGGGCTAACTAGTGACCCCACAGATGATGAACACTCTTTCAAGAGTGCAGGAAGTTCCAAACCACAATCTACTAAAGACCAACAGACCTCAACTGAGTCTGCAAGACTCACCAGCTGTGCTGGTGTTGCAATGCTTGTAGCTTCAATAGCTGAAACTGTTTATTCTTATCTTCAAGTTAGTCTACGATTAATTCAAAGAATAATCTGTTTGATGATATGTAGTTTATTCCTGCTACATAGAATTTCCATATTGGAACCAAAAATCATGGCATCAACAGCCTATCCACCAGAAAAATTTCTTCTTCGGCAGTCAATGCATCAACTTTGGAAACTACGTCAAGAAGTTTTTGATGCAGAAGTAGTTAGGTTTAAGACAATAGTAGCTGCCAATTTAAATGCAATAACCCAGGTGCGGAAAACTCTAAAGATGCTGGAAGATGATTTGGAAGCTCATATGAGTAGAAACTGTACCTTACTAGAAAATAATGTGTGTGTACAAATGTGAAAGTGCAATTAGCAATACAATCCTTGGGCAACGTTTTGAAAAGATCCAAACAGTCACACTGTTATAGTATTACTTAGTTCATGAGGTCCTGAGGATCTTACGTTTATTACAATTGTGTCCACTGGACTGGGTTATAGAAAAGTTCTAACAAGATCAGATGTCTTTCCTATAAGAAAAGCTTTCACTAGTTAGTAGTAAGGCCTTTAAGGGTTTCAGTTATTAGTAGTGATGCAAGCAAGAGTGTAAACTGTAAGTCCATACAACCAATAAGAAGCTCAAATGCAAGCACACAGAAGCAAGTGAAGAGTTTAATTCATGTATTGCTTCTGCTTGGTTGGCAGGGACTCCTGTGTGCCTGCATGCAGTTGTACTAATATGACAAATGATGAAAATTTGCTCAATCCTCTAAACAGTTTCCAACATCATGCCTGAATCCCCCTTGGATGCCCAATTTTACCTAAAAGTCTTGCTTATCCTTGCATTACTAGTGACACCGTAGCCCTCATACTTAGGTATTAATATCTTGTAAAATTAATTAAAACTGCTGGCATAGTTTATCCACTCAAAGTAAAAAGTACAATCAGATTTGTTATGATGTGCAACCTCCGAGCTCTTGACATCACAACCAAGAAACAGATCTAACGCAGTCCACAAAGGTGCAGGAATGACTCAAGTGGCTGGTCCACAGTTCATTCCCTTAGTGGAGATGTTGTCATGGATCATCTATATCCTCAGCCTTAGCCTTTTATTTCTGAATACTCTTAACAGCAAAGTTATGTGTCACAAATTGAAGTGGTTATGGGCCGTAAACACTCCATTTTTTCAAGAGTGTTTCTGAAGTAATGCCATCCCTATCCTGTAGAGGTAAACCTGCTGTTGATGGTTACTGAGCCTTGAATGGAATTTCAGCAACATCTGACCTGCTTTGAGTTGGTAAAATGTGTCTGGTAGAATTAGTTTGTTCCGAGATTGTACTGTCAAAAACGTGGTGTACATTATCGATCATTTTGGCTCCAAATTTTATCACCGACAACCATCGATCCGTTTAAGAAGGATTGACATATTTATTTTCTCAAATTTCACACAAATATTTTAATTGAGACAGGAGTGATATTTTGTATGTAAATATTATGCCAAGTATATATAAATTGTAATTTGTTGCTGTGTTTAAAAATTGAAAGGCACAGCCTGTCCAGGAACCAGAAAAAAGTGATAAAAGTTGCTTGTCTATTTATTGTGAAAATGAAGTGGGTTAGGAAGCGTAAACATTGACTAACAAAACCAAAATTTATTGAAGATTAGAAGTGCTGGCATTTCTATTTCTCACTAAGAGTAGCTAAGCTGAGTCAATGATAAAAATAGTAGTTGCATGCATTTCTGGAATGTGTGTAATTTTGAATATATTATCCTTTAATTAATATTTAGTAATTCTTACACCTCTTAAGCAGCCTTGACACGAGCTCATTGAAGTTAATGGTAAAAAAGCATCTCTAGACTAAAATTCTCATGTCTACAAACAACTGAATGGTTTAACACACATACACCTGCATGAACAGAATTGTAACTGTAACTGTATTTTAAATTTCAATTTGATTACTGTAAATGGGATTTTTATGTTGAGTTTTGACCAGATTTTGCCATTTTACCTTTTACAACAGATCATTTACCCATCAACCATGTTTATAACAATTATTTCTTCTCAAGTTACCGGTAAATAACACTCTTAACCCTTTCAACCCTAACAGTGATCAGCATCAAATTTCTCCTTGTAATATTAACTGCTTTACAAAACAAAGTGGTCATGAGAATTGAGGACAGAATCACACAAGATGAATTTGCTTGATATTTTAACAGTTTCTCCCTACTAATTGTATAGCAAATGTGTGGGAGCAACAAATGAGAATTAAAATTTTGTTCTTAGAGTTTAGAGGGTTAAGAAATAGACTGGTTTTACGTAACCCGTGAAACAATTTTTTTTTATACAACATGTAACATAACGTAACACCAGTAGTCAAATACACACAAAGAATTCAAAGGAAATAGTGTGTACTAGGTGCTGGCGGTTATTCTTACACTTCTATTTCACGGGTTAAGGAAAATCTGGCATTCTAAGAGGTATCTAATTAAATTGTTAAGCAGTAACGTAGAGGCAATTTCAATAATTTTATTGGGAATGGTTTAAATAGCAATTTGAACTGTTTTCTAACAGCATTTTGTCAGAGAGTTTTTTCCAGGAACAAAAAAGGGGAATAAAAGGTTTTTTACTTTTGTGTTGAAGTAAACAAAAGTAATAGGAATATATTTGAAACGAAATATGTAGTGTTAAAAATGTACTTTAGAAGTAATTAATTAATAAGGGTTTTCAATAACCAAACAGTTGTGGTAAATTTTGTGTATAGCCTTCCTGAGGAGTACTTCTTTTCAGCCCCCAGGAACTGGGAATAATAAAATGTTATTTATTTGTCGTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3KR37	Protein Aster-B OS=Homo sapiens OX=9606 GN=GRAMD1B PE=1 SV=1
Q80TI0	Protein Aster-B OS=Mus musculus OX=10090 GN=Gramd1b PE=1 SV=2
Q96CP6	Protein Aster-A OS=Homo sapiens OX=9606 GN=GRAMD1A PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001069 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02893 all species →	GRAM	GRAM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR004182 all species →	Domain	GRAM domain	Interproscan
IPR051482 all species →	Family	Cholesterol transport domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23319 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0032366 all species →	Biological Process	intracellular sterol transport	Interproscan
GO:0032934 all species →	Molecular Function	sterol binding	Interproscan
GO:0120015 all species →	Molecular Function	sterol transfer activity	Interproscan
GO:0140268 all species →	Cellular Component	endoplasmic reticulum-plasma membrane contact site	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gfas1.m1.7871.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of gfas1.m1.7871.m1 across 22 RNA-seq samples of Galaxea fascicularis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

22Samples

20TPM > 0

4Conditions

88.3Max TPM

48.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
coral holosome · Control	7	7	53.13	74.81
coral holosome · 30ic treatment	6	4	34.54	60.61
coral holosome · Prometryn (herbicidess) treatment	5	5	63.88	88.30
coral holosome · Prometryn (herbicidess) and 30ic treatment	4	4	41.72	44.84

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27118491	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	74.81
SRR27118485	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	73.58
SRR27118480	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	60.41
SRR27118486	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	58.18
SRR27118487	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	48.48
SRR27118488	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	31.79
SRR27118492	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	24.64
SRR27118466	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	60.61
SRR27118476	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	50.91
SRR27118478	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	49.68
SRR27118479	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	46.02
SRR27118468	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	0.00
SRR27118477	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	0.00
SRR27118484	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	88.30
SRR27118483	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	75.08
SRR27118481	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	56.34
SRR27118469	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	51.11
SRR27118482	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	48.56
SRR27118489	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	44.84
SRR27118472	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	43.69
SRR27118490	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	42.74
SRR27118475	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	35.59

Source: CnidoSite RNA-seq expression matrices (GFASC_TPM, StringTie quantification over 22 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.