Gene detail

Detailed information of gfas1.m1.7891.m1 in Galaxea fascicularis

Genomic Location: Sc0000595:73286...88629
NR annotation: CAH3037259.1, unnamed protein product [Porites lobata]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

gfas1.m1.7891.m1

CCTGGTGCTTCCATTGTATCGTAAGCCAAAGGCATTTAGTACTTTTTTGGCATTTGTCTACAGTCTGGTAAATCGCTGGGTAAATTCAAAGTTTTTAGTACCCAGGCTTCTTTAAAGACGTTGTTCGTTGTCATAGTTGTCATATGACCGGCACCTGACTGAGTACATAATTGTACTGTACTTTCAGTTTCTGCCGAAGTGGATCTGTTCATCGTCATTTTGTATGCAGCAATTCTAGAAAATCATGAACGATAATTATTTCCAACATGTTGTATTATGCGTGGTCCTTTTAGTCGCGTTTTCAAGCGGTGTCAGAGCCGTGAAAGTCGAAAAATACGAACCTACATGGGAAAGCTTAGATCGCAGACCAATACCAGAATGGTATGACGAAGCCAAGTTTGGAATTTTCATGCACTGGGGACTTTATTCTGTTCCGAGTTTTGGAGACGAATGGTTTTGGTATTTTTGGAAAGGCGAACACATTTCGTCGTACGTGGAATATATGGAAAAGAACTATCCGCCTGGATTTTCTTACGCCGAATTTGGTCCAATGTTTACCGCAGAATTCTTCGATCCAAATGCGTTTGCCGAACTTGTGAATAACTCTGGGGCGAGCATTGCTCATCCTCCAAATATACAGGTCAAACCTGTCTCCACTTGTAAAGGAAATAACAGCATAGGGCTGAGGTTCACAGGTGACTCAGTAGATGCTACAGATGAGGACTTGAGGATATCTGGTGGATCACAACTGCCAGGGGAAGGTGAAGTGGCAACAGAATCAGCAATACCCATTGATACTACGGAGCTGTACATTGTACATATATCTCTGGAGTTGTGGCATGACATCGGGGGAATTTATTATGCAAATCCTATGTTGTACTGGATTTGATACTATGTTTTAACCACCAAACATCACGATGGTTGGACCAACTGGAAGTCAAATGTATCTTGGAATTACAATGCTGTTGATACTGGGCCACACATGGACCTTGTGGGTGCCATAGCCCTACCTCAAATTTATGACCTTATCAATACATATCAGCCTGATGTTCTCTGGACTGACGGAGACTGGGAGTCAAGTTCAGATTACTGGATGAGCAAGGAGTTTCTGGCATGGCTTTACAATGAGAGCCCCGTAAGAGATAAAATAGTTGTCACTGACAGGTGGGGGAATGACTCTCGTTACCATCATGGCGGAGTGATGACTGATCCAGACCGTTTTAATCCCAAAAGTTTGCAGAAGGAAAAATGGGAAGACGCCACAAGCGTTGACAAGAGATCTTGGGGTTACAGAAGAAATGCTAACATTGAAGATTTCTACAGCACCTATGATCTTATCACTTTCCTTGTTCAGGCAGTTAGTTGTGGTGGTAACTTTCTCCTTAACATTGGTCCAACCAGAGAAGGCACCATAGCACCAGCTTTCCAGGAGCGGCTCCTTCAAATGGGTCAGTGGCTGAAAGTGAATGGCGAGGCAATCTACTCCACCCGGCCGTGGAGAGCTCAGAATGACAGCGTGGCCCCAAATGTTTGGTATACTACAAAGTACACGAAGGCGGAATTCCTGGCCTATGCTATCATCATTAACAAATTCCCGACCACACCCTCCGTACTGTTGGGTGAACCCATCCCAACCAATGACACAGTAGTCACTATGCTTGGAGTGGATAAAGGGTTTAAGTGGAGTTCAGCTTCTGACAAGAGAGGCATCGAGATTTATATTCCTCCATATTTCCAGCTGCCCTCTCCTTATGCCTGGGTTTTTAAACTGGAAAATGTCATTTAATTTTTTAGCAATCTGTAATGTACAATGTACTTACAACAGTACATAATCATTTAGGTATTTGTAGTTGTGGTTTAGCTGTATATGGGTACATGTGAGAACTATGATTCTTAAAGCTCCTACTAAACGATCAAACATTTTAATCCAATATCATGTTGAATGAGCATGTTTGACCGTTTAGCCGACTCTCTCAACATTACATTTTAATGGTTTCCAATGTTTGATGTAGATCAAACATTTTCATCTAACATTTGCTTCGCGCGCAAACGTTTGACCGTTTAGCCACCTGTTCAAACAAAGCAAGAGCGAGCGCGAAAAAGCAACCAATCAGAAAGCGAATCTGCGGACGTGCACGTCATAAGTTCAGCGGTAACACGCAGAAAGCGTTATGTGGGCTCACTTTGATCGATGTTTCATCAAACATTGGTTGTTCTTTTAGCCACCCCACGTTGTGTGCAACAAAAACGATGTTGGATGAAAAATGTTTGAACGTTTAGCTGGGACTTAAGGCCTCTGATCCTGAATTCTTGACTCTTATTCCGAGATCTGATTCTGAATTCTCGCCTCTGATTTTGAATTCTGATGCAGAATACTGATTGTCAGTACAGAATTCACATCTGATTCTGAATTCTCGCCTCTTATCCTGAATTCTGATTTTCAATTCTCGCCTTTTATTCCGAATTCTGATTCTGAAGAACCCAGAAAATTATTTTGGGAATTGTCGAGAGAGCAAATCAAACTGGTGCGCGTGAAATTATGGCTTCCGCGGGACACGTGTGGAAGAAAAATTGTATTTAATTATTGTTATTGTTAGTATTGTTGTTTTATTTTTTGAAATTATAAAACCACATTTTTCAATATACAAGGCGGAAATATTTCCACACAGCCCCATACATTAATTATACATGCATCACTGTGATGCTAAACCTTGTTCAAAAAGCGAACAGAGTTTGAGTCACAAAATGCATGTATGATTAATGTATGCCGCTGTGCGGAAATCTTGCCTACAAGGCTAATACGGTGTAATTGTCAATAGGAGGGAGGAAAATTGTAGAGGCGATTTTCGCACAAGCTGAAGTATTATCAGCGTTTTTTAATTCACTTTATATACAAAAATAAAACAAGGCACAAAACAAATAAAGCATTAGTCAGTAGAATAAAGGGGGTAGTTTCTAAAGAAACTGTGGTGCTGCGTCGGTGGGGAAGTAGTACACAAAAATTTGGTATTATCAACAGAGTTGATAAATGTAAATTGACCACCGTACAGGGATTCTAAAAGCTGACGTTTCGAGCGTTAGCCCTTCGTCAGAGCGAATCCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
C3YWU0	Alpha-L-fucosidase OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_56888 PE=3 SV=2
Q2KIM0	Tissue alpha-L-fucosidase OS=Bos taurus OX=9913 GN=FUCA1 PE=2 SV=1
P48300	Tissue alpha-L-fucosidase OS=Canis lupus familiaris OX=9615 GN=FUCA1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000711 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01120 all species →	Alpha_L_fucos	Alpha-L-fucosidase	Domain	Interproscan
PF16757 all species →	Fucosidase_C	Alpha-L-fucosidase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000933 all species →	Family	Glycoside hydrolase, family 29	Interproscan
IPR016286 all species →	Family	Alpha-L-fucosidase, metazoa-type	Interproscan
IPR031919 all species →	Domain	Alpha-L-fucosidase, C-terminal	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10030 all species →	ALPHA-L-FUCOSIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004560 all species →	Molecular Function	alpha-L-fucosidase activity	Interproscan
GO:0005764 all species →	Cellular Component	lysosome	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0006004 all species →	Biological Process	fucose metabolic process	Interproscan
GO:0016139 all species →	Biological Process	glycoside catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for gfas1.m1.7891.m1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of gfas1.m1.7891.m1 across 22 RNA-seq samples of Galaxea fascicularis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

22Samples

21TPM > 0

4Conditions

185.6Max TPM

104.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
coral holosome · Control	7	6	110.33	170.66
coral holosome · 30ic treatment	6	6	78.36	145.64
coral holosome · Prometryn (herbicidess) treatment	5	5	123.18	185.57
coral holosome · Prometryn (herbicidess) and 30ic treatment	4	4	109.29	177.33

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27118492	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	170.66
SRR27118480	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	163.11
SRR27118485	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	131.64
SRR27118491	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	120.88
SRR27118486	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	101.09
SRR27118487	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	84.90
SRR27118488	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	0.00
SRR27118466	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	145.64
SRR27118468	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	88.70
SRR27118477	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	62.36
SRR27118478	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	59.01
SRR27118476	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	57.40
SRR27118479	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	57.05
SRR27118469	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	185.57
SRR27118484	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	129.45
SRR27118483	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	111.94
SRR27118482	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	97.45
SRR27118481	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	91.52
SRR27118490	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	177.33
SRR27118489	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	131.52
SRR27118475	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	65.79
SRR27118472	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	62.51

Source: CnidoSite RNA-seq expression matrices (GFASC_TPM, StringTie quantification over 22 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.