Gene detail

Detailed information of gfas1.m1.7895.m1 in Galaxea fascicularis

Genomic Location: Sc0000596:26812...36052
NR annotation: CAH3014398.1, unnamed protein product [Porites evermanni]
Species Galaxea fascicularis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UUG3	Diphthamide biosynthesis protein 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=dph4 PE=3 SV=1
P14906	Protein translocation protein SEC63 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=SEC63 PE=1 SV=2
Q2JH49	Chaperone protein DnaJ OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) OX=321332 GN=dnaJ PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002939 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05207 all species →	zf-CSL	CSL zinc finger	Domain	Interproscan
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR007872 all species →	Domain	DPH-type metal-binding domain	Interproscan
IPR042978 all species →	Family	DnaJ homolog subfamily C member 24	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR036671 all species →	Homologous_superfamily	DPH-type metal-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45255 all species →	DNAJ HOMOLOG SUBFAMILY C MEMBER 24	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001671 all species →	Molecular Function	ATPase activator activity	Interproscan
GO:0008198 all species →	Molecular Function	ferrous iron binding	Interproscan
GO:0032781 all species →	Biological Process	positive regulation of ATP-dependent activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17867	DPH4, DNAJC24; diphthamide biosynthesis protein 4	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of gfas1.m1.7895.m1 across 22 RNA-seq samples of Galaxea fascicularis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

22Samples

11TPM > 0

4Conditions

36.7Max TPM

11.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
coral holosome · Control	7	2	9.02	31.99
coral holosome · 30ic treatment	6	4	11.07	19.52
coral holosome · Prometryn (herbicidess) treatment	5	2	8.27	27.22
coral holosome · Prometryn (herbicidess) and 30ic treatment	4	3	22.37	36.72

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR27118487	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	31.99
SRR27118486	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	31.17
SRR27118480	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	0.00
SRR27118485	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	0.00
SRR27118488	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	0.00
SRR27118491	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	0.00
SRR27118492	coral holosome · Control	coral holosome	not recorded	Control	SRP476288	0.00
SRR27118478	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	19.52
SRR27118466	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	18.43
SRR27118479	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	15.68
SRR27118476	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	12.75
SRR27118468	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	0.00
SRR27118477	coral holosome · 30ic treatment	coral holosome	not recorded	30ic treatment	SRP476288	0.00
SRR27118481	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	27.22
SRR27118469	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	14.11
SRR27118482	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	0.00
SRR27118483	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	0.00
SRR27118484	coral holosome · Prometryn (herbicidess) treatment	coral holosome	not recorded	Prometryn (herbicidess) treatment	SRP476288	0.00
SRR27118475	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	36.72
SRR27118490	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	28.38
SRR27118472	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	24.38
SRR27118489	coral holosome · Prometryn (herbicidess) and 30ic treatment	coral holosome	not recorded	Prometryn (herbicidess) and 30ic treatment	SRP476288	0.00

Source: CnidoSite RNA-seq expression matrices (GFASC_TPM, StringTie quantification over 22 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.